View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5892_high_1 (Length: 770)

Name: NF5892_high_1
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5892_high_1
NF5892_high_1
[»] chr1 (1 HSPs)
chr1 (20-758)||(21013334-21014067)


Alignment Details
Target: chr1 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 20 - 758
Target Start/End: Original strand, 21013334 - 21014067
Alignment:
Q  20 aagagtttctactcgaatctttgacctagagaagataagttttcaagttagtttcgagtactatactcaaatgctctagaaaacttataaagaatgaagt 119  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||    
T  21013334 aagagtttgtacttgaatctttgacctagagaagataagttttcaagttagtatctagtactatactcaaatgctctagaaaacttgtaaagaatgaagt 21013433  T
Q  120 cttgaagctccagatatttccataagcactctctatcatacattatgttcattttttaaagtagtcaaggttcaaatgacccctatttccaagaaaatga 219  Q
     |||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21013434 gttgaagctacagatatttccataagcactctctatcgtacactatgttcattttttaaagtagtcaaggttcaaatgacccctatttccaagaaaatga 21013533  T
Q  220 aactgaaagttgaaaatagaactctatgcaacnnnnnnnn-caatgtttcgaagatgatcatagaaaatatgtctgaggcataactcaatagttcgtcca 318  Q
    ||||||||||||||||||||||||||||||||         |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  21013534 aactgaaagttgaaaatagaactctatgcaacaaaagaaaacaatgtttcgaagacgatcatagaaaatatgtctgaggcataactcaatagttcgtcca 21013633  T
Q  319 aaaaagcttgtatnnnnnnntgaaactatgatacttcacaatggacctttactgtaacagtagttccagcattccctctaagcctcttcgctgcaccttc 418  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21013634 aaaaagcttgtataaaaaaatgaaactatgatacttcacaatggacctttactgtaacagttgttccagcattccctctaagcctcttcgctgcaccttc 21013733  T
Q  419 actatcaatgccattaagcctctcccctgcacaatcagatccattttcaaacaaaagaaaattactatttcattttcacaaggactaaatgtaataatat 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||      |||||| ||    
T  21013734 actatcaatgccattaagcctctcccctgcacaatcagatccattttcaaacaaaagaaaattactatttcattttcagaaggac------taataaaat 21013827  T
Q  519 tttacagaaaatcactttttacagcatcattctacattactgttttcaaattaaatattttagaataactaacttggtcagtaccatttatttcaactaa 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21013828 tttacagaaaatcactttttacagcatcattctacattactgttttcaaattaaatattttagaataactaacttggtcagtaccatttatttcaactaa 21013927  T
Q  619 ttcatctccttgatgaataccggcacgagcagctggactgttttctatgcatgacaaaacaacctgtgattttcagatannnnnnnnnnnnnnnaaaaga 718  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||    
T  21013928 ttcatctccttgatgaataccggcacgagcagctggactgttttctatgcatgacaaaacaacctgtgattttcagatatttttatttttttttaaaaga 21014027  T
Q  719 cagacaatcataatttaagaacggaaatcaacacaggttc 758  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21014028 cagacaatcataatttaagaacggaaatcaacacaggttc 21014067  T

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