View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5892_high_11 (Length: 482)

Name: NF5892_high_11
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5892_high_11
NF5892_high_11
[»] chr8 (2 HSPs)
chr8 (47-220)||(14789288-14789461)
chr8 (310-482)||(14789023-14789192)
[»] chr2 (2 HSPs)
chr2 (47-220)||(2705622-2705795)
chr2 (308-482)||(2705891-2706065)
[»] chr5 (4 HSPs)
chr5 (133-208)||(22311520-22311595)
chr5 (137-207)||(24275945-24276015)
chr5 (137-207)||(24386198-24386268)
chr5 (133-208)||(36098571-36098646)
[»] scaffold0003 (3 HSPs)
scaffold0003 (133-208)||(208111-208186)
scaffold0003 (394-454)||(207622-207682)
scaffold0003 (133-208)||(213163-213238)
[»] scaffold0077 (2 HSPs)
scaffold0077 (133-208)||(48549-48624)
scaffold0077 (133-208)||(58304-58379)
[»] chr3 (1 HSPs)
chr3 (133-208)||(41931940-41932015)


Alignment Details
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 47 - 220
Target Start/End: Complemental strand, 14789461 - 14789288
Alignment:
Q  47 tagacagcaagaattgtctgaaagacgatcaaattacagtcagacgaaggacaaagataaacaagtggaaataacgagtgtcatagacagagagcacatg 146  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  14789461 tagatagcaggaattgtctgaaagacgatcaaattacagtcagacgaaggataaagataaacaagtggaaataacgagtgtcatagactgagagcacatg 14789362  T
Q  147 atgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatgatgaggcttagtg 220  Q
    ||||||||| |||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||    
T  14789361 atgccattttaggatttgacaaatttctattttgtattgtcacatgttcaaggaacacatgatgaggcttagtg 14789288  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 310 - 482
Target Start/End: Complemental strand, 14789192 - 14789023
Alignment:
Q  310 cacttaactgtctatattagaacttacagagcaacagtttgactgatcatattctctagaaactcataggaagcgagcatagtctcaaggaactcataac 409  Q
    ||||| ||||||||||||||||||||||||||| || ||||| |   |||||||||||| |||||||| |||||||||||| ||||||||||||||||||    
T  14789192 cactttactgtctatattagaacttacagagcagcattttgatt---catattctctaggaactcatatgaagcgagcatattctcaaggaactcataac 14789096  T
Q  410 aatagagcggggacaagtagaaaaaataatgatgacgctacaagtatgtgatgcaagtaatttcagacatatt 482  Q
    |||||||| ||| ||||||||| ||||| ||||||| |||||||| ||  || |||||||||||  |||||||    
T  14789095 aatagagcagggccaagtagaagaaatattgatgacactacaagtgtggtatacaagtaatttctaacatatt 14789023  T

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Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 47 - 220
Target Start/End: Original strand, 2705622 - 2705795
Alignment:
Q  47 tagacagcaagaattgtctgaaagacgatcaaattacagtcagacgaaggacaaagataaacaagtggaaataacgagtgtcatagacagagagcacatg 146  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  2705622 tagacagcaagaattgtctgaaagacgatcgaattacagtcatacgaaggacaaagataaacaagtggaaataacgaatgtcatagacggagagcacatg 2705721  T
Q  147 atgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatgatgaggcttagtg 220  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||| ||||||||||||    
T  2705722 atgccatttcaggatttgacaaatatctattttgcattgtcacatgttcaaggaacacatggtgaggcttagtg 2705795  T

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Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 308 - 482
Target Start/End: Original strand, 2705891 - 2706065
Alignment:
Q  308 atcacttaactgtctatattagaacttacagagcaacagtttgactgatcatattctctagaaactcataggaagcgagcatagtctcaaggaactcata 407  Q
    ||||||| ||||||||||||||||||||| ||||| || ||||| | |||||||||||||| |||||||| ||||||  |||| ||||||||||||||||    
T  2705891 atcactttactgtctatattagaacttactgagcagcattttgattcatcatattctctaggaactcatatgaagcggccatattctcaaggaactcata 2705990  T
Q  408 acaatagagcggggacaagtagaaaaaataatgatgacgctacaagtatgtgatgcaagtaatttcagacatatt 482  Q
    |||||||||||||| ||||||||| ||||| |||| || |||||||| ||  || |||||||||||  |||||||    
T  2705991 acaatagagcggggccaagtagaagaaatattgataacactacaagtgtggtatacaagtaatttctaacatatt 2706065  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 22311595 - 22311520
Alignment:
Q  133 acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga 208  Q
    ||||||| ||||||||||||||| | ||||||||||||||  ||||  ||| |||||||||||||| |||||||||    
T  22311595 acagagatcacatgatgccatttaatgatttgacaaatttaaattttacatcgtcacatgttcaaggaacacatga 22311520  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 24276015 - 24275945
Alignment:
Q  137 agagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatg 207  Q
    ||||| ||||||||||||||| ||||||||||||||  |||  |  |||||||||||||||| ||||||||    
T  24276015 agagcccatgatgccatttcaagatttgacaaatttaaattgtgtgttgtcacatgttcaaggaacacatg 24275945  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 24386198 - 24386268
Alignment:
Q  137 agagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatg 207  Q
    ||||| ||||||||||||||| ||||||||||||||  |||  |  |||||||||||||||| ||||||||    
T  24386198 agagcccatgatgccatttcaagatttgacaaatttaaattgtgtgttgtcacatgttcaaggaacacatg 24386268  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 36098646 - 36098571
Alignment:
Q  133 acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga 208  Q
    ||||||| |||||||||| |||| | ||||||||||||||  ||||  ||| ||||| |||||||| |||||||||    
T  36098646 acagagatcacatgatgctatttaatgatttgacaaatttaaatttcacatcgtcacgtgttcaaggaacacatga 36098571  T

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Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 208186 - 208111
Alignment:
Q  133 acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga 208  Q
    ||||||| ||||||||||||||| | ||||||||||||||  ||||  ||| ||||| |||||||| |||||||||    
T  208186 acagagatcacatgatgccatttaatgatttgacaaatttaaatttcacatcgtcacgtgttcaaggaacacatga 208111  T

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Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 454
Target Start/End: Complemental strand, 207682 - 207622
Alignment:
Q  394 tcaaggaactcataacaatagagcggggacaagtagaaaaaataatgatgacgctacaagt 454  Q
    ||||||||||||| |||||  ||||||  ||||||||| ||||||||||||| ||||||||    
T  207682 tcaaggaactcatgacaatgaagcgggaccaagtagaagaaataatgatgacactacaagt 207622  T

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Target: scaffold0003; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 213238 - 213163
Alignment:
Q  133 acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga 208  Q
    ||||||| ||||||||||||| | | ||||||||||||||  ||||  ||| ||||| |||||||| |||||||||    
T  213238 acagagatcacatgatgccatctaatgatttgacaaatttaaatttcacatcgtcacgtgttcaaggaacacatga 213163  T

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Target: scaffold0077 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 48624 - 48549
Alignment:
Q  133 acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga 208  Q
    ||||||| ||||||||||||||| | ||||||||||||||  ||||  ||| ||||  |||||||| |||||||||    
T  48624 acagagatcacatgatgccatttaatgatttgacaaattttaatttcacatcgtcatgtgttcaaggaacacatga 48549  T

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Target: scaffold0077; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 58379 - 58304
Alignment:
Q  133 acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga 208  Q
    ||||||| ||||||||||||||| | ||||||||||||||  ||||  ||| ||||  |||||||| |||||||||    
T  58379 acagagatcacatgatgccatttaatgatttgacaaattttaatttcacatcgtcatgtgttcaaggaacacatga 58304  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 41931940 - 41932015
Alignment:
Q  133 acagagagcacatgatgccatttcaggatttgacaaatttctatttagcattgtcacatgttcaagaaacacatga 208  Q
    ||||||| ||||||||||||| | | ||||||||||||||  ||||  ||| ||||| |||||||| |||||||||    
T  41931940 acagagatcacatgatgccatgtaatgatttgacaaatttaaatttcacatcgtcacgtgttcaaggaacacatga 41932015  T

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