View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_high_16 (Length: 453)
Name: NF5892_high_16
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 45646173 - 45646476
Alignment:
| Q |
18 |
atcatatcgatacattgaatgatcaatttggtttgannnnnnnaaagtaatttatgtatacgtctattattttgtagttttgttagtgatttcatacatt |
117 |
Q |
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| T |
45646173 |
atcatatcgatacattgaatgatcaatttggtttgatttttttaaagtaatttatgtatacgtctattattttgtagttttgttagtgatttcatacatt |
45646272 |
T |
|
| Q |
118 |
tgtatttggttgttgctttaaactcattcactgctatacggtaaagaatatccctctctataannnnnnnnnnnnnnnnnnnnccagccttgactgagtg |
217 |
Q |
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| T |
45646273 |
tgtatttggttgttgctttaaactcattcactgctatacggtaaagaatatccctctata-aattttttttttctttttctttccagccttgactgagtg |
45646371 |
T |
|
| Q |
218 |
ttacaaaaatcttaatatttcatcttttatgaattatatggaacgtttgtgttccagttatcccacaattgttcatgtgagatttaaatactataaagac |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45646372 |
ttacaaaaatcttaatatttcatcttttatgaattatatggaacgtttgtgttccagttatcccacaattgttcatgtgagatttaaatactataaaaac |
45646471 |
T |
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| Q |
318 |
tcttt |
322 |
Q |
| |
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||||| |
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| T |
45646472 |
tcttt |
45646476 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 7411912 - 7411944
Alignment:
| Q |
21 |
atatcgatacattgaatgatcaatttggtttga |
53 |
Q |
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| T |
7411912 |
atatcgatacaatgaatgatcaatttggtttga |
7411944 |
T |
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