View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5892_high_17 (Length: 441)
Name: NF5892_high_17
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_high_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 235 - 425
Target Start/End: Original strand, 30360975 - 30361166
Alignment:
| Q |
235 |
attacaagctccagctaa-tttattttgcttgaaattaaagatggttagaagaggggttcctctttgcgtgcagtgtggcacaagaagcaacccgtgccg |
333 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30360975 |
attacaagctctagctaaatttattttgcttgaaattaaagatggttagaagaggggttcctctttgcgtgcagtgtggcacaagaagcaacccgtgccg |
30361074 |
T |
|
| Q |
334 |
gtgtaaggtggtggggccaacgcttgggttcgtggcgtttgttgtggcgggggtggtggaatggccggttggggctcttgtttatatcttta |
425 |
Q |
| |
|
|||||||||||||||||||||| | || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30361075 |
gtgtaaggtggtggggccaacgatcggattcgtggcgtttgtcgtggcgggggtggtggaatggccggttggggctcttgtttatatcttta |
30361166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 7 - 169
Target Start/End: Original strand, 30360746 - 30360908
Alignment:
| Q |
7 |
acatcatcaaataaagcaaggaataaaaagagacaagacacatgtcaaaccgccaaagcaagtacgacacttgcaccaacaatacttaagctgcaaacac |
106 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
30360746 |
acatcataaaataaagcaaggaataaaaagagacaagacacatgtcaaactgccaaagcaagtaagacacttgcaccaataatacttaagctgcaaacac |
30360845 |
T |
|
| Q |
107 |
gtagcagtaacacatcaccacaccatccagcactgttcacgataatcaaacattataaaagga |
169 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30360846 |
gtagcagtaacacatcaccacacaatccagcactgttcacgataaccaaacattataaaagga |
30360908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 299 - 425
Target Start/End: Original strand, 30356443 - 30356569
Alignment:
| Q |
299 |
tgcgtgcagtgtggcacaagaagcaacccgtgccggtgtaaggtggtggggccaacgcttgggttcgtggcgtttgttgtggcgggggtggtggaatggc |
398 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||| | ||| | ||||||||| |||| |
|
|
| T |
30356443 |
tgcgtgcagtgtggcacaagaagcaacccttgccggtgtaaggtggtgggaccaacgctcgggtttgtggcgtttgtcgcggcagcggtggtggagtggc |
30356542 |
T |
|
| Q |
399 |
cggttggggctcttgtttatatcttta |
425 |
Q |
| |
|
|||||||||| |||||||||||||||| |
|
|
| T |
30356543 |
cggttggggcccttgtttatatcttta |
30356569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 30356219 - 30356297
Alignment:
| Q |
72 |
gacacttgcaccaacaatacttaa-gctgcaaacacgtagcagtaacacatcacc-acaccatccagcactgttcacga |
148 |
Q |
| |
|
||||| |||||||| ||||||||| ||| || ||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
30356219 |
gacacctgcaccaataatacttaaagctacagacacgtagcagtaacacatcaccgaacccatccagcactgttcacga |
30356297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University