View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_high_18 (Length: 422)
Name: NF5892_high_18
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 13 - 404
Target Start/End: Complemental strand, 7046972 - 7046581
Alignment:
| Q |
13 |
aatatcttacacggtaatttccaatcgttttcacttttgctagtgtgtgatcaatttatatgagaagacaataattgagttttcgaattaattcatacag |
112 |
Q |
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| T |
7046972 |
aatatcttacacggtaatttccaatcgttttcacttttgctagtgtgtgatcaatttatatgagtagacaataattgagttttcgaattaattcatacag |
7046873 |
T |
|
| Q |
113 |
gtgccagtgtatatagctgagatatcacctcaaaacttgaggggaagtctggtttcagttaaccaggttggtaaataccatcaattagagttaaatttct |
212 |
Q |
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| T |
7046872 |
gtgccagtgtatatagctgagatatcacctcaaaacttgaggggaagtctggtttcggttaaccaggttggtaaataccatcaattagagttaaatttct |
7046773 |
T |
|
| Q |
213 |
attttggtgctacatttgaataaattatcacttcctagattagtgagctttattttaaatttttgttttctgcatagctttctgtcacacttggaattat |
312 |
Q |
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| T |
7046772 |
attttggtgctacatttgaataaattatcacttcctagattagtgagctttatttaaaatttttgttttctgcatagctttctgtcacccttggaattat |
7046673 |
T |
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| Q |
313 |
gctggcttatctgctaggactttttgttgaatggagattccttgcaattttaggtaatagaactatacaataagattgcattatgttatttc |
404 |
Q |
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| T |
7046672 |
gctggcttatctgctaggactttttgttgaatggagattccttgcaattttaggtaatagaactatacaataagattgcattatgttatttc |
7046581 |
T |
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