View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_high_2 (Length: 757)
Name: NF5892_high_2
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 3e-75; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 565 - 747
Target Start/End: Complemental strand, 52391653 - 52391477
Alignment:
| Q |
565 |
tgtacaagatttccacattccctcctatattttccacctctgaagccatcccttctcataccttttaaactctcaaaattggaacagaattcctgttcca |
664 |
Q |
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| T |
52391653 |
tgtacaagatttccacattccctcctatattttccaactctgaagtcatcccttctcatacctttcaaactctcaaaattggaacagg------gttcca |
52391560 |
T |
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| Q |
665 |
acttgaagagggaatcttattagtgatattacaaaaactaatgatgattggaggctaaattttttatgttccttttccctttg |
747 |
Q |
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| T |
52391559 |
acttgaagagggaatcttattagtgatattacaaaaactaatgatgattggaggctaaattttttatgttccttttccctttg |
52391477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 464 - 526
Target Start/End: Complemental strand, 52393099 - 52393037
Alignment:
| Q |
464 |
ctgctaaacaactagtcttatcttttagtaaaagtacttctatgcttcgtcatttaatcttgt |
526 |
Q |
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| T |
52393099 |
ctgctaaacaactagtcttatcttttagtaaaagtacttctatgcttcgtcatttaatcttgt |
52393037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 20 - 371
Target Start/End: Original strand, 8504365 - 8504716
Alignment:
| Q |
20 |
aacatccatcaccatgataacactttgatttcctccaccaaatcatccacctcaaagtttattcccttgaagatcttatcattcctcctacaccacaaaa |
119 |
Q |
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| T |
8504365 |
aacatccatcgccatgataacactttaatctcgtccaccaattcctctacctcaacattcctcccattgaaaatcttctcattacgcctattccatagca |
8504464 |
T |
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| Q |
120 |
cccaaatagaagtatgccaaattaaccacattcccttagttaattttttggaatttcctccggcactccaacattcccaatgaataaagaagtttggagg |
219 |
Q |
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| T |
8504465 |
cccatattgtagtgtgccaaattagccacaagccttttgttaccttttttgaattaccccctacactccaacattcccaatgaataacgaaatttggagg |
8504564 |
T |
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| Q |
220 |
tgtgaggaaactacaattcaaccataacatctaacttaagccataccca-acttgctacatcacaatgtaaaaagagatgaagcgtcgattcctccttcg |
318 |
Q |
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| T |
8504565 |
ggttaaaaaccaaaaattcaaccacaccat-taatttgagccaaaaccgcacacgccacatcacaatgtaagaaaagatgtagcgccgattcctccttta |
8504663 |
T |
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| Q |
319 |
cattgtaaatcacacataacgtagacacctccggaggtagcacatttctcaac |
371 |
Q |
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| T |
8504664 |
gattacacatgacacacaacggagaaacctccggcggtagcacattcctcaac |
8504716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 52393166 - 52393122
Alignment:
| Q |
378 |
ttgtcttgccctagttctattggcaaattgcatcctctggtgtct |
422 |
Q |
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| T |
52393166 |
ttgtcttgccctagttctattggcaaattgcatcctctagtgtct |
52393122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 3e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 47476592 - 47476232
Alignment:
| Q |
18 |
ccaacatccatcaccatgataacactttgatttcctccaccaaatcatccacctcaaagtttattcccttgaagatcttatcattcctcctacaccacaa |
117 |
Q |
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| T |
47476592 |
ccaacatccatctccaagataacactttgatttcctcaaccaattcctccacctcaaaattcctccccttgaagatcttatcatttctcctattccacaa |
47476493 |
T |
|
| Q |
118 |
aacccaaatagaagtatgccaaattaaccacattcccttagttaattttttggaatttcctccggcactccaacattcccaatgaataaagaagtttgga |
217 |
Q |
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| T |
47476492 |
aacccaaatcgttgtgtgccaaattaaccaaaatcctttggtaacttttttagaatttcccccaacactccaacattcccaatgaacaaagaaatttgga |
47476393 |
T |
|
| Q |
218 |
ggtgtgaggaaactacaattcaaccataacatctaacttaagccatacccaacttgctacatcacaatgtaaaaagagatgaagcgtcgattcctccttc |
317 |
Q |
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| T |
47476392 |
ggtgtgaaaaagctacaattcaaccacatcatc-aaagtacgccacaccaaaaccgcaacgtcacaatgtagaaagaggtgtaacgccgattcttccttc |
47476294 |
T |
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| Q |
318 |
gcattgtaaatcacacataacgtagacacctccggaggtagcacatttctcaacccaagatt |
379 |
Q |
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| T |
47476293 |
acattgcacatcacacataacgtagacgcttccggtggtaacacattcctcaacgcaagatt |
47476232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 43073923 - 43073956
Alignment:
| Q |
183 |
cactccaacattcccaatgaataaagaagtttgg |
216 |
Q |
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| T |
43073923 |
cactccaacattcccaatgaataaacaagtttgg |
43073956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 31035005 - 31035096
Alignment:
| Q |
56 |
accaaatcatccacctcaaagtttattcccttgaagatcttatcattcctcctacaccacaaaacccaaatagaagtatgccaaattaacca |
147 |
Q |
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| T |
31035005 |
accaattcctccacctcaaagtttattcccttgaaaatcatgtcatttctcgttttccacaaaacccaaatagttgtgtgctaaattaacca |
31035096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 10430381 - 10430342
Alignment:
| Q |
177 |
ctccggcactccaacattcccaatgaataaagaagtttgg |
216 |
Q |
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| T |
10430381 |
ctccggcactccaacattcccaatgaataaacaaatttgg |
10430342 |
T |
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