View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_high_20 (Length: 405)
Name: NF5892_high_20
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_high_20 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 3 - 404
Target Start/End: Complemental strand, 43579996 - 43579595
Alignment:
| Q |
3 |
gaaggggtggcaaaggatcaccctgcctaacacttcttctgcaattgaaataaccattttgcttgccattaactgagatggataacgttgctgactcaaa |
102 |
Q |
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| T |
43579996 |
gaaggggtggcaaaggatcaccctgcctaacacttcttctgcaattgaaataaccattttgcttgccattaactgagatggataacgttgctgactcaaa |
43579897 |
T |
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| Q |
103 |
tagtgtcgatccagctgcataacttgttattaaaaccaaaagattgaagtattttaataagaaaactccattcaattgtatcaaacgctttagagatgtc |
202 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43579896 |
tagtttcgatccagctgcataacttgttattaaaaccaaaagattgaagtattttaataagaaaactccattcaattgtatcaaacgctttagagatgtc |
43579797 |
T |
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| Q |
203 |
aattttgaaagcaagatttccgcggaaagaccctttatgcaaaagattgattgttttcaaagttacacaaattcaatccttgacctgcctaccttgaatg |
302 |
Q |
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|||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43579796 |
aattttgaaagcaagattggcgccgaaagaccttttatgcaaaagattgattgttttcgaagttacactaattcaatccttgacctgcctaccttgaatg |
43579697 |
T |
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| Q |
303 |
aaccctctttgctctttggaaatgattgaaggcatgattgatgctagtgtatcagaaaggatcttgggggtttctacgatgcagtcaggaaactgacttt |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||| ||||||||||| |
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| T |
43579696 |
aaccctctttgctctttggaaatgattgaaggcatgattgatgctagtgcatcagaaaggatcttgggggtttctatggtgcagtcagtaaactgacttt |
43579597 |
T |
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| Q |
403 |
tt |
404 |
Q |
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|| |
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| T |
43579596 |
tt |
43579595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 372 - 405
Target Start/End: Complemental strand, 30254840 - 30254807
Alignment:
| Q |
372 |
gtttctacgatgcagtcaggaaactgactttttt |
405 |
Q |
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| T |
30254840 |
gtttctacggtgcagtcaggaaactgactttttt |
30254807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 374 - 405
Target Start/End: Original strand, 33816308 - 33816339
Alignment:
| Q |
374 |
ttctacgatgcagtcaggaaactgactttttt |
405 |
Q |
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| T |
33816308 |
ttctacgatgcagtcaggaaactgactttttt |
33816339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 405
Target Start/End: Complemental strand, 8437383 - 8437353
Alignment:
| Q |
375 |
tctacgatgcagtcaggaaactgactttttt |
405 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
8437383 |
tctacgatgcagtcaggaaactgactttttt |
8437353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 374 - 403
Target Start/End: Complemental strand, 25889789 - 25889760
Alignment:
| Q |
374 |
ttctacgatgcagtcaggaaactgactttt |
403 |
Q |
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| T |
25889789 |
ttctacgatgcagtcaggaaactgactttt |
25889760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 405
Target Start/End: Original strand, 21009560 - 21009598
Alignment:
| Q |
367 |
tgggggtttctacgatgcagtcaggaaactgactttttt |
405 |
Q |
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|||| ||||||||| |||||||||||||||||||||||| |
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| T |
21009560 |
tgggagtttctacggtgcagtcaggaaactgactttttt |
21009598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 372 - 405
Target Start/End: Complemental strand, 35859354 - 35859321
Alignment:
| Q |
372 |
gtttctacgatgcagtcaggaaactgactttttt |
405 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
35859354 |
gtttctacggtgcagtcaggaaactgactttttt |
35859321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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