View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_high_23 (Length: 386)
Name: NF5892_high_23
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_high_23 |
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| [»] scaffold0650 (1 HSPs) |
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Alignment Details
Target: scaffold0650 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: scaffold0650
Description:
Target: scaffold0650; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 19 - 386
Target Start/End: Complemental strand, 3513 - 3141
Alignment:
| Q |
19 |
agttcgactcccactaccgaagttagaacctcgttagttgcactctcaaaacattgagttatgtttcggctctggttaacttcaagacccaactcaaata |
118 |
Q |
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| T |
3513 |
agttcgactcccactaccgaagttagaacctcgttagttgcactctcaaaacattgaggtatgtttcagctctggtgagcttcaagacccaactcaaata |
3414 |
T |
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| Q |
119 |
actttttattatctaaatatnnnnnnnn----------tatgcgcgaaacaccaccataaagactctttcgtgctttggttagagattataatcgaccgt |
208 |
Q |
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| T |
3413 |
actttttattatctaaatataaaaaaataaaaaataaatatgcgcgaaac---accataaagattctttcgtgctttggttagaggttgtagtcaaccgt |
3317 |
T |
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| Q |
209 |
agattagtctcataatgagcacaaacgatccatatttgtagggatacttaggatttcattagagccaaattctaattacttatgaaagaatgtaaatagt |
308 |
Q |
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| T |
3316 |
agattagtctcataatgagcacaaacgatctatatttgtagggatacttaggatttgattagagccaaattctaattacttatgaaagaatgtaaatagt |
3217 |
T |
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| Q |
309 |
aaatctctgtagtttatatatctaataaagtcacaattattattattatacacataaacattgggtacctatgctact |
386 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||| |
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| T |
3216 |
aaatctctgtagtttatata--taataaagtcacaattattattattacacacataaatattgggtacctgtgctact |
3141 |
T |
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