View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_high_24 (Length: 384)
Name: NF5892_high_24
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_high_24 |
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| [»] scaffold2055 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 10 - 367
Target Start/End: Original strand, 30225266 - 30225623
Alignment:
| Q |
10 |
aagaatataacaataatataaatacaaagtatgtataagaaaatctatgtttcagatcagaccatgcatatttcctaaagaaaacttcaaaaatgcaaag |
109 |
Q |
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| T |
30225266 |
aagaaaataacaataatataaatacaaagtatgtataagaaaatctatgtttcagatcagaccatgcatatttcctaaagaaaactttaaaaatgcaaag |
30225365 |
T |
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| Q |
110 |
aggaatatttgtagtaaataacatatataatcttatccccactaatcgtaattcctggatccttcttatgtattttgcaattaattttttgtggatatct |
209 |
Q |
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| T |
30225366 |
aggaatatttgtagtaaataacatatataatcttatccccactaatcgtaattcctggatccttcatatgtattttgcaattaattttttgtggatatct |
30225465 |
T |
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| Q |
210 |
cggagatctccatagctgcttcggatatgactttgactgctttctctatgcagaacttcaatttttgttcatctatgaatccctttagggttttcaaggt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30225466 |
cggagatctccatagctgcttcggatatgactttgactgctttctctatgcagaacttcaatttttgttcatctatgaatccctttagggttttcaaggt |
30225565 |
T |
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| Q |
310 |
gattcttaatacattcatgtagctaataattgtaatgtttacattctgcaacaacaaa |
367 |
Q |
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| T |
30225566 |
gattcttaatacattcatgtagctaataattgtaatgtttacattctgcaacaacaaa |
30225623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 217 - 365
Target Start/End: Original strand, 30028635 - 30028783
Alignment:
| Q |
217 |
ctccatagctgcttcggatatgactttgactgctttctctatgcagaacttcaatttttgttcatctatgaatccctttagggttttcaaggtgattctt |
316 |
Q |
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| T |
30028635 |
ctccatagctgctttggatatgattgcagctgctttctcaatgcagaacttcaatttatattcatctatgaaccccttttgggttttcatagcgattctt |
30028734 |
T |
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| Q |
317 |
aatacattcatgtagctaataattgtaatgtttacattctgcaacaaca |
365 |
Q |
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| T |
30028735 |
aatattttctcgtagctaataattgtaattgttaaattctgcatcaaca |
30028783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 217 - 365
Target Start/End: Original strand, 30044904 - 30045052
Alignment:
| Q |
217 |
ctccatagctgcttcggatatgactttgactgctttctctatgcagaacttcaatttttgttcatctatgaatccctttagggttttcaaggtgattctt |
316 |
Q |
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|||||||||||||| |||||||| | |||||||||| ||||||||||||||||| | |||||||||||| |||||| ||||||||| | ||||||| |
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| T |
30044904 |
ctccatagctgctttggatatgattgcagctgctttctcaatgcagaacttcaatttatattcatctatgaaccccttttgggttttcatagcgattctt |
30045003 |
T |
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| Q |
317 |
aatacattcatgtagctaataattgtaatgtttacattctgcaacaaca |
365 |
Q |
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| T |
30045004 |
aatattttctcgtagctaataattgtaattgttaaattctgcatcaaca |
30045052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 212 - 361
Target Start/End: Complemental strand, 30222532 - 30222383
Alignment:
| Q |
212 |
gagatctccatagctgcttcggatatgactttgactgctttctctatgcagaacttcaatttttgttcatctatgaatccctttagggttttcaaggtga |
311 |
Q |
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||||||||||||||||||| | ||||||||| ||||||||||| |||||||| || ||||| ||||||| ||||| || || | ||| |||| |||| |
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| T |
30222532 |
gagatctccatagctgctttgaatatgacttcaactgctttctccatgcagaatttgaatttccgttcatcaatgaaccctttcaatgttctcaatgtga |
30222433 |
T |
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| Q |
312 |
ttcttaatacattcatgtagctaataattgtaatgtttacattctgcaac |
361 |
Q |
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| T |
30222432 |
ttcttaatattttcacatagctcataattgtaatgtctacattctgcaac |
30222383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 217 - 345
Target Start/End: Original strand, 30056650 - 30056778
Alignment:
| Q |
217 |
ctccatagctgcttcggatatgactttgactgctttctctatgcagaacttcaatttttgttcatctatgaatccctttagggttttcaaggtgattctt |
316 |
Q |
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|||||||||||||| | |||||| || ||||||||| ||| ||||||||||||| |||||||||||||| |||||| ||||||||| || ||||||| |
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| T |
30056650 |
ctccatagctgctttgaatatgatttcagatgctttctcaatgtagaacttcaatttatgttcatctatgaaccccttttgggttttcatggcgattctt |
30056749 |
T |
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| Q |
317 |
aatacattcatgtagctaataattgtaat |
345 |
Q |
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| T |
30056750 |
aatattttctcgtagctaataattgtaat |
30056778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2055 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold2055
Description:
Target: scaffold2055; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 217 - 345
Target Start/End: Original strand, 80 - 208
Alignment:
| Q |
217 |
ctccatagctgcttcggatatgactttgactgctttctctatgcagaacttcaatttttgttcatctatgaatccctttagggttttcaaggtgattctt |
316 |
Q |
| |
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|||||||||||||| | |||||| || |||||||||| ||| ||||||||||||| |||||||||||||| |||||| ||||||||| || ||||||| |
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| T |
80 |
ctccatagctgctttgaatatgatttcagctgctttctcaatgtagaacttcaatttatgttcatctatgaaccccttttgggttttcatggcgattctt |
179 |
T |
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| Q |
317 |
aatacattcatgtagctaataattgtaat |
345 |
Q |
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|||| || |||||||||||||||||| |
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| T |
180 |
aatattttttcgtagctaataattgtaat |
208 |
T |
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