View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5892_high_27 (Length: 368)
Name: NF5892_high_27
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_high_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 22 - 329
Target Start/End: Original strand, 24304833 - 24305140
Alignment:
| Q |
22 |
aatgaattacatgaagactatccttaagacgagactgtgtagtatcaaggtgtttgttgatgagaataaaatggattataattctctcgcccacatcatg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24304833 |
aatgaattacatgaagactatccttaagacgagactgtgtagtatcaaggtgtttgttgatgagaataaaatggattataattctctcgcccacatcatg |
24304932 |
T |
|
| Q |
122 |
attttcttgaaattttatcatattatttcttatatttaaatagggtttaaggcttcaatattgtaacatcgatgcagaataattggtcttcatttatttc |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24304933 |
attttcttgaaattttatcatattatttcttatatttaaatagggtttaaggcttcaatattgtaacatcgatgctgaataattggtcttcatttatttc |
24305032 |
T |
|
| Q |
222 |
attggatcttgagaaagtattacatatattattttattacgaggataattgtaagacctttaagaagtcaaaataattaattttggatgataacattaag |
321 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
24305033 |
attggatcttgagaaaatattacatatattattttattacgaggataattgtaagacctttaagaagtcaaaataatttattttggatgatgacattaag |
24305132 |
T |
|
| Q |
322 |
ttattatt |
329 |
Q |
| |
|
|||||||| |
|
|
| T |
24305133 |
ttattatt |
24305140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 24754997 - 24755049
Alignment:
| Q |
223 |
ttggatcttgagaaagtattacatatattattttattacgaggataattgtaa |
275 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||| ||||||| |||||| |
|
|
| T |
24754997 |
ttggatcttgagaaaatattacatattttattttattatgaggatatttgtaa |
24755049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 12373858 - 12373908
Alignment:
| Q |
226 |
gatcttgagaaagtattacatatattattttattacgaggataattgtaag |
276 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
12373858 |
gatcttgagaaaaaattacatattttattttattttgaggataattgtaag |
12373908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 12333114 - 12333167
Alignment:
| Q |
223 |
ttggatcttgagaaagtattacatatattattttattacgaggataattgtaag |
276 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||| |||||||||| |||| |
|
|
| T |
12333114 |
ttggatcttgagaaaacattacatattttattttattgtgaggataattataag |
12333167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 24760461 - 24760514
Alignment:
| Q |
223 |
ttggatcttgagaaagtattacatatattattttattacgaggataattgtaag |
276 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||| ||| || ||||||||||| |
|
|
| T |
24760461 |
ttggatcttgagaaaatattacatattttattttcttatgaaaataattgtaag |
24760514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 24843842 - 24843879
Alignment:
| Q |
239 |
tattacatatattattttattacgaggataattgtaag |
276 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
24843842 |
tattacatattttattttattatgaggataattgtaag |
24843879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 16652595 - 16652639
Alignment:
| Q |
234 |
gaaagtattacatatattattttattacgaggataattgtaagac |
278 |
Q |
| |
|
|||| |||||||||| ||||||||||| || |||||||||||||| |
|
|
| T |
16652595 |
gaaaatattacatattttattttattatgaagataattgtaagac |
16652639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University