View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_high_29 (Length: 350)
Name: NF5892_high_29
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 169 - 333
Target Start/End: Original strand, 22938595 - 22938760
Alignment:
| Q |
169 |
atggattagcaggagggaagtgtcgtgtccaagtctttcaaaacccctaaagcttccgcaagttacttgaatactaacgtaagcttacaaaaacttaaac |
268 |
Q |
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| T |
22938595 |
atggatttgcatgagggaagtgccgtgtccaagtctttcagaatccctaaagcttccgcaagttacttgaatactaatgtaagcatacaaaaacttaaac |
22938694 |
T |
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| Q |
269 |
-ttgtccagacaaaaaagggttgattaactccatctttcaaaagcttaaacatttacccagaaaaa |
333 |
Q |
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| T |
22938695 |
attgcccggacaaaaaagggttgattaactccatctttcaaaagcttaaacatttacctagaaaaa |
22938760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 22938400 - 22938522
Alignment:
| Q |
8 |
cgaagaaaatttgaacaagataaacactaacaagcatctctagaaattatatgaacaaaatttacccagaaattatgtgataaacatatgtccataatga |
107 |
Q |
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|||| ||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
22938400 |
cgaataaaatttgaacaagatacacactaataagcatctctagaaattacatgaacaaaatttacccagaaaatatgtgataaacatatgtccagaatga |
22938499 |
T |
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| Q |
108 |
catacggcttctatgacattatc |
130 |
Q |
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| T |
22938500 |
catacgacttctatgtcattatc |
22938522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 203 - 333
Target Start/End: Complemental strand, 15499933 - 15499802
Alignment:
| Q |
203 |
ctttcaaaacccctaaagcttccgcaagttacttgaatactaacgtaagcttacaaaaacttaaac-ttgtccagacaaaaaagggttgattaactccat |
301 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||| ||| || |||||||||||||||||||||| |
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| T |
15499933 |
ctttcagaacccttaaagcttccgcaagttacttgaatactgacgtacgcttacaaaaacttaaacattgcccaaaccaaaaagggttgattaactccat |
15499834 |
T |
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| Q |
302 |
ctttcaaaagcttaaacatttacccagaaaaa |
333 |
Q |
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| T |
15499833 |
ctttcaaaagcttaaagatttacctagaaaaa |
15499802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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