View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_high_30 (Length: 325)
Name: NF5892_high_30
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 310
Target Start/End: Complemental strand, 10030127 - 10029837
Alignment:
| Q |
20 |
gagaagcgagaggggaatcataagaaacatgtgtgacgaagttggtacgagttttggaaccgcgaagaagtgtcgcggcttcatcataagctcttgctgc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10030127 |
gagaagcgagaggggaatcataagaaacatgtgtgacgaagttggtacgagttttggaaccgcgaagaagtgtcgcggcttcatcataagctcttgctgc |
10030028 |
T |
|
| Q |
120 |
ttcctcagctgtttcaaatgttccaagccacattcttatgttttgtgttgtgtcctttatctcagcaacatatctacctgatggtctttgtctcacccca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10030027 |
ttcctcagctgtttcaaatgttccaagccacattcttatgttttgtgttgtgtcctttatctcagcaacatatctacctgatggtctttgtctcacccca |
10029928 |
T |
|
| Q |
220 |
acaaacttgtctcttgtttcactctttttgtttctccctttgaatttgttaaccttttttggtctcaaactcttctttggttcatcaaatt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10029927 |
acaaacttgtctcttgtttcactctttttgtttctccctttgaatttgttaaccttttttggtctcaaactcttctttggttcatcaaatt |
10029837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 224
Target Start/End: Complemental strand, 4038808 - 4038684
Alignment:
| Q |
100 |
tcatcataagctcttgctgcttcctcagctgtttcaaatgttccaagccacattcttatgttttgtgttgtgtcctttatctcagcaacatatctacctg |
199 |
Q |
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|||||||||||||| || ||||| |||||||| ||||| ||||| | ||| | |||||| ||||| | || || || ||||||||||| ||||||| | |
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| T |
4038808 |
tcatcataagctctagcagcttcttcagctgtatcaaaagttcctaaccaaactcttatcttttgaatggtatctttaatctcagcaacccatctacccg |
4038709 |
T |
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| Q |
200 |
atggtctttgtctcaccccaacaaa |
224 |
Q |
| |
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|||| ||||||| || |||||||| |
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| T |
4038708 |
atggcctttgtcgaacgccaacaaa |
4038684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 46 - 229
Target Start/End: Original strand, 33274219 - 33274402
Alignment:
| Q |
46 |
acatgtgtgacgaagttggtacgagttttggaaccgcgaagaagtgtcgcggcttcatcataagctcttgctgcttcctcagctgtttcaaatgttccaa |
145 |
Q |
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||||| |||| ||||||||| ||||| || ||||| |||||||| || ||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
33274219 |
acatgagtgatgaagttggttcgagtgttcgaacctcgaagaaggcatgcagcttcatcataagctctagctgcttcctcagctgtctcaaatgttccaa |
33274318 |
T |
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| Q |
146 |
gccacattcttatgttttgtgttgtgtcctttatctcagcaacatatctacctgatggtctttgtctcaccccaacaaacttgt |
229 |
Q |
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||||||||||||| || || |||||||| || |||||||| || |||| |||||||| ||||| || || ||||||||||||| |
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| T |
33274319 |
gccacattcttatcttctgagttgtgtctttgatctcagctacccatctccctgatggcctttgcctaacaccaacaaacttgt |
33274402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 224
Target Start/End: Complemental strand, 3160343 - 3160216
Alignment:
| Q |
97 |
gcttcatcataagctcttgctgcttcctcagctgtttcaaatgttccaagccacattcttatgttttgtgttgtgtcctttatctcagcaacatatctac |
196 |
Q |
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|
||||||||||| |||||||| ||||| |||||||| ||||| ||||| | ||| | |||||| || || | || || ||||||||||| || |||| | |
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| T |
3160343 |
gcttcatcataggctcttgcagcttcttcagctgtatcaaaagttcctaaccaaactcttatcttctgaatggtatcttttatctcagctacccatcttc |
3160244 |
T |
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| Q |
197 |
ctgatggtctttgtctcaccccaacaaa |
224 |
Q |
| |
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||||||| ||||||||||| |||||||| |
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| T |
3160243 |
ctgatggcctttgtctcacaccaacaaa |
3160216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 47101348 - 47101407
Alignment:
| Q |
92 |
tcgcggcttcatcataagctcttgctgcttcctcagctgtttcaaatgttccaagccaca |
151 |
Q |
| |
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|||| |||| |||||| |||||||||||||| || ||||||||||||||||| ||||||| |
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| T |
47101348 |
tcgcagcttgatcatatgctcttgctgcttcttctgctgtttcaaatgttcctagccaca |
47101407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 1726310 - 1726251
Alignment:
| Q |
97 |
gcttcatcataagctcttgctgcttcctcagctgtttcaaatgttccaagccacattctt |
156 |
Q |
| |
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||||||||||| ||||||||||| || || ||||||||||||||||| | ||| |||||| |
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| T |
1726310 |
gcttcatcatatgctcttgctgcatcttctgctgtttcaaatgttcctaaccatattctt |
1726251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 2428679 - 2428725
Alignment:
| Q |
97 |
gcttcatcataagctcttgctgcttcctcagctgtttcaaatgttcc |
143 |
Q |
| |
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||||||||||| ||||| |||||||| |||||||| ||||||||||| |
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| T |
2428679 |
gcttcatcatatgctctagctgcttcttcagctgtctcaaatgttcc |
2428725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 30641841 - 30641786
Alignment:
| Q |
101 |
catcataagctcttgctgcttcctcagctgtttcaaatgttccaagccacattctt |
156 |
Q |
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|
|||||||||||||||| |||| ||||| || ||||||||||||||||| |||||| |
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| T |
30641841 |
catcataagctcttgcagcttgttcagcagtatcaaatgttccaagccatattctt |
30641786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 44331788 - 44331840
Alignment:
| Q |
97 |
gcttcatcataagctcttgctgcttcctcagctgtttcaaatgttccaagcca |
149 |
Q |
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|||||||| |||||||||||||| | || || |||||||||||||||||||| |
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| T |
44331788 |
gcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttccaagcca |
44331840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 227
Target Start/End: Complemental strand, 35666002 - 35665872
Alignment:
| Q |
97 |
gcttcatcataagctcttgctgcttcctcagctgtttcaaatgttccaagccacattcttatgttttgtgttgtgtcctttatctcagcaacatatctac |
196 |
Q |
| |
|
|||||||| ||||||| || ||||||||||| |||| | | || ||||||||||| || ||||| | || |||||| |||||||| || | || | | |
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| T |
35666002 |
gcttcatcgtaagctcgagcagcttcctcagcagttttataggtaccaagccacatcctaatgttctttgatgtgtcttttatctctgctgcccattttc |
35665903 |
T |
|
| Q |
197 |
ctgatggtctttgtctcaccccaacaaactt |
227 |
Q |
| |
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|||| | |||||||||||| ||||||||||| |
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| T |
35665902 |
ctgaagctctttgtctcactccaacaaactt |
35665872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 44648686 - 44648732
Alignment:
| Q |
97 |
gcttcatcataagctcttgctgcttcctcagctgtttcaaatgttcc |
143 |
Q |
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||||||||||| ||| | |||||||| |||||||||||||||||||| |
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| T |
44648686 |
gcttcatcatatgctttagctgcttcttcagctgtttcaaatgttcc |
44648732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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