View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_high_34 (Length: 292)
Name: NF5892_high_34
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 14 - 274
Target Start/End: Original strand, 35519723 - 35519983
Alignment:
| Q |
14 |
atatagcacctaaatttcattgaaccaaataaactcaattattccaatcttcaaaatattctagctacaaattaacattgtatgaaaaatgatgtcaagg |
113 |
Q |
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| T |
35519723 |
atatagcacctaaatttcattgaaccaaataaactcaattattccaatcttcaaaatattctagctacaaattaacattgtatgaaaaatgatgtcaagg |
35519822 |
T |
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| Q |
114 |
acaacacctctagggtttgaaattgaaaatcaaggcctacaaatgtttcctatggtcacggaagatttgatgccattgccaaattccatggaaggaattt |
213 |
Q |
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| T |
35519823 |
acaacacctctagggtttgaaattgaaaatcaaggcctacaaatgtttcctatggtcacggaagattttatgccattgccaaattccatggaaggaattt |
35519922 |
T |
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| Q |
214 |
caagttcaacttcaccctccaattccctcctcttcaatctctctactctcaaagacaagct |
274 |
Q |
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| T |
35519923 |
caagttcaacttcaccctccaattccctcctcttcaatctctctactctcaaagacaagct |
35519983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 129 - 276
Target Start/End: Original strand, 35535939 - 35536083
Alignment:
| Q |
129 |
tttgaaattgaaaatcaaggcctacaaatgtttcctatggtcacggaagatttgatgccattgccaaattccatggaaggaatttcaagttcaacttcac |
228 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||| ||||||| |||||||||| || |
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| T |
35535939 |
tttgaaattggaaatcaaggcctacaaatgtttcctatggtcacagaagatttgacgccattgccaaatt---tggaaagaatttctagttcaactttac |
35536035 |
T |
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| Q |
229 |
cctccaattccctcctcttcaatctctctactctcaaagacaagctca |
276 |
Q |
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| T |
35536036 |
cctccaattccctcctcttcaatctctctactctcaaagacaagctca |
35536083 |
T |
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