View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_high_55 (Length: 247)
Name: NF5892_high_55
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_high_55 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 29619288 - 29619527
Alignment:
| Q |
1 |
ccacttccttccgttacattgttgtttactcctccggtcgttataatcaatgtgagactaatattgtaaatagccattttcgtccttaaatgtttaacga |
100 |
Q |
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| T |
29619288 |
ccactttcttccgttacattgttgtttactcctccggtccttataatcaatgtgagactaatattgtaaatagccattttcgtccttaaatgtttaacga |
29619387 |
T |
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| Q |
101 |
gtagcagtactagttcctcaatgtagtgaaattacaaaatagtctcgattgtgcattctattagttaaaatagtccccggcaagaacaaatgcatctatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29619388 |
gtagcagtactagttcctcaatgtagtgaaattacaaaatagtctcgattgtgcattctattagttaaaatagtccccggcaagaacaaatgcatctatt |
29619487 |
T |
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| Q |
201 |
tcgatcaagaaatgcttagatctttcatgcatactctctg |
240 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |
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| T |
29619488 |
tcgatcaagaaatgcttagatgtttcatgcatactctctg |
29619527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 29621044 - 29621283
Alignment:
| Q |
1 |
ccacttccttccgttacattgttgtttactcctccggtcgttataatcaatgtgagactaatattgtaaatagccattttcgtccttaaatgtttaacga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29621044 |
ccacttccttccgttacattgttgtttactcctccggtccttataatcaatgtgagactaatattgtaaatagccattttcgtccttaaatgtttaacga |
29621143 |
T |
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| Q |
101 |
gtagcagtactagttcctcaatgtagtgaaattacaaaatagtctcgattgtgcattctattagttaaaatagtccccggcaagaacaaatgcatctatt |
200 |
Q |
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| T |
29621144 |
gtagtagcactagttcatcaatgtagtgaaattacaaaatagtctcgattgtgcattctgttagttaaaatagtccccgacaagaacaaatgcatctatt |
29621243 |
T |
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| Q |
201 |
tcgatcaagaaatgcttagatctttcatgcatactctctg |
240 |
Q |
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| T |
29621244 |
ttgatcaagaaatgcttagatctttcatgcatactctctg |
29621283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 176
Target Start/End: Complemental strand, 11459119 - 11459008
Alignment:
| Q |
66 |
gtaaatagccattttcgtccttaaatgtttaacgagtagcagtactagttcctcaatgtagtgaaattacaaaatagt-ctcgattgtgcattctattag |
164 |
Q |
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|||||| | ||||||||||| | ||||| |||||||||| | | |||| | |||||||| |||||||||||||||| || |||||||||||| |||| |
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| T |
11459119 |
gtaaattgtcattttcgtccctgaatgtgcaacgagtagccgcaatagtcctccaatgtagagaaattacaaaatagtccttgattgtgcattccgttag |
11459020 |
T |
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| Q |
165 |
ttaaaatagtcc |
176 |
Q |
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| T |
11459019 |
tcaaaatagtcc |
11459008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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