View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_high_58 (Length: 243)
Name: NF5892_high_58
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_high_58 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 1481568 - 1481791
Alignment:
| Q |
1 |
cacaagggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagttgctatgtcacttgcactcactgaaacaagtatagtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1481568 |
cacaagggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagttgctatgtcacttgcactcactgaaacaagtatagtg |
1481667 |
T |
|
| Q |
101 |
agcgcaaccctctttgcatgctgccatgtttatggctacagtttcagtagtgatacggaggttgttaaatacgttactgtcttggctcttctggtttcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1481668 |
agcgcaaccctctttgcatgctgccatgtttatggctacattttcagtagtgatacggaggttgttaaatacgttactgtcttggctcttctggtttcta |
1481767 |
T |
|
| Q |
201 |
tatctgttatactcgatagcatac |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
1481768 |
tatctgttatactcgatagcatac |
1481791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 49190898 - 49191121
Alignment:
| Q |
1 |
cacaagggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagttgctatgtcacttgcactcactgaaacaagtatagtg |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| |
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| T |
49190898 |
cacaagggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagctgctatgtcacttggactcactgaagcaagtatagtg |
49190997 |
T |
|
| Q |
101 |
agcgcaaccctctttgcatgctgccatgtttatggctacagtttcagtagtgatacggaggttgttaaatacgttactgtcttggctcttctggtttcta |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||||||||||| ||||||||||| |
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| T |
49190998 |
agcgcaaccctctttgcatgccgccatgtttatggctacattttcagtagtgatacagaagttgttaaatacgtcactgtcttggctcctctggtttcta |
49191097 |
T |
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| Q |
201 |
tatctgttatactcgatagcatac |
224 |
Q |
| |
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|||| ||||||||||| ||||||| |
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| T |
49191098 |
tatccgttatactcgacagcatac |
49191121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 37
Target Start/End: Complemental strand, 30475886 - 30475857
Alignment:
| Q |
8 |
gtttcaaatgaattaggagctggtaatcca |
37 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
30475886 |
gtttcaaatgaattaggagctggtaatcca |
30475857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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