View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5892_high_63 (Length: 240)

Name: NF5892_high_63
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5892_high_63
NF5892_high_63
[»] chr2 (3 HSPs)
chr2 (48-156)||(8716445-8716552)
chr2 (48-128)||(8723902-8723983)
chr2 (188-223)||(8716549-8716584)
[»] chr8 (2 HSPs)
chr8 (48-154)||(23443777-23443883)
chr8 (191-221)||(23443745-23443775)
[»] chr3 (3 HSPs)
chr3 (49-156)||(14333549-14333655)
chr3 (87-156)||(14329590-14329658)
chr3 (49-156)||(14323851-14323957)
[»] chr5 (1 HSPs)
chr5 (48-128)||(21236898-21236979)


Alignment Details
Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 48 - 156
Target Start/End: Original strand, 8716445 - 8716552
Alignment:
Q  48 gttaatctaacctgaaaattattgtgagtgaaaatccacgtggtttcgaaaacaaaatgatgtgtttggtgtgctatgaaaattaataatatgcacgagt 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  8716445 gttaatctaacctgaaaattattgtgagtgaaaatccacgtggtttcgaaaacaaaatgatgtgtttggtgtgcaatg-aaattaataatatgcacgagt 8716543  T
Q  148 tatcatcat 156  Q
    |||||||||    
T  8716544 tatcatcat 8716552  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 8723902 - 8723983
Alignment:
Q  48 gttaatctaacctgaaaattattgtgagtgaa-aatccacgtggtttcgaaaacaaaatgatgtgtttggtgtgctatgaaa 128  Q
    ||||| |||||||  |||||||| |||||||| |||||||   |||||||| ||||||||||||||||| ||||||||||||    
T  8723902 gttaagctaacctagaaattattatgagtgaagaatccacacagtttcgaacacaaaatgatgtgtttgttgtgctatgaaa 8723983  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 223
Target Start/End: Original strand, 8716549 - 8716584
Alignment:
Q  188 tcatatatctatagttcattatttatataggatagt 223  Q
    ||||||||||||||||||||||||||||||||||||    
T  8716549 tcatatatctatagttcattatttatataggatagt 8716584  T

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Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 23443883 - 23443777
Alignment:
Q  48 gttaatctaacctgaaaattattgtgagtgaaaa-tccacgtggtttcgaaaacaaaatgatgtgtttggtgtgctatgaaaattaataatatgcacgag 146  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| || |    
T  23443883 gttaatctaacctgaaaattattgcgagtgaaaaatccacgtggtttcgaaaacaaaatgatgtgtttgatgtgctatg-aaattaataatatgcgcggg 23443785  T
Q  147 ttatcatc 154  Q
    ||||||||    
T  23443784 ttatcatc 23443777  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 23443775 - 23443745
Alignment:
Q  191 tatatctatagttcattatttatataggata 221  Q
    |||||||||||||||||||||||||||||||    
T  23443775 tatatctatagttcattatttatataggata 23443745  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 14333655 - 14333549
Alignment:
Q  49 ttaatctaacctgaaaattattgtgagtgaaaatc-cacgtggtttcgaaaacaaaatgatgtgtttggtgtgctatgaaaattaataatatgcacgagt 147  Q
    |||||||||| ||||||||||| ||||||||||   || ||||||| ||||||||||||||||||||  ||| ||||| |||||||||||||| | || |    
T  14333655 ttaatctaac-tgaaaattattctgagtgaaaaaagcatgtggtttggaaaacaaaatgatgtgtttattgtactatg-aaattaataatatgaatgact 14333558  T
Q  148 tatcatcat 156  Q
    |||||||||    
T  14333557 tatcatcat 14333549  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 14329658 - 14329590
Alignment:
Q  87 gtggtttcgaaaacaaaatgatgtgtttggtgtgctatgaaaattaataatatgcacgagttatcatcat 156  Q
    ||||||| ||||||||||||||||||||  ||| ||||| |||||||||||||| | || ||||||||||    
T  14329658 gtggtttggaaaacaaaatgatgtgtttattgtactatg-aaattaataatatgaatgacttatcatcat 14329590  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 14323957 - 14323851
Alignment:
Q  49 ttaatctaacctgaaaattattgtgagtgaaaatc-cacgtggtttcgaaaacaaaatgatgtgtttggtgtgctatgaaaattaataatatgcacgagt 147  Q
    |||||||||| ||| ||||||| ||||||||||   || ||||||| ||||||||||||||||||||  ||| ||||  || ||||||||||| | || |    
T  14323957 ttaatctaac-tgagaattattctgagtgaaaaaagcatgtggtttggaaaacaaaatgatgtgtttattgtactat-taatttaataatatgaatgact 14323860  T
Q  148 tatcatcat 156  Q
    |||||||||    
T  14323859 tatcatcat 14323851  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 21236979 - 21236898
Alignment:
Q  48 gttaatctaacctgaaaattattgtgagtgaa-aatccacgtggtttcgaaaacaaaatgatgtgtttggtgtgctatgaaa 128  Q
    ||||| |||||||  |||||||| |||||||| |||||||   |||||||| ||||||||||||||||| | ||||||||||    
T  21236979 gttaagctaacctagaaattattatgagtgaagaatccacacagtttcgaacacaaaatgatgtgtttgttctgctatgaaa 21236898  T

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