View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5892_high_64 (Length: 240)
Name: NF5892_high_64
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_high_64 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 27294824 - 27295063
Alignment:
| Q |
1 |
cagagactaaaggagctgtacgttggattctcgatggaattgagatatattattatcgacaaaggagcattgcattatctgaaaaagcttcagttaggct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27294824 |
cagagactaaaggagctgtacgttggattctcgatggaattgagatatattattatcgacgaaggagcattgccttatctgaaaaagcttcagttaggct |
27294923 |
T |
|
| Q |
101 |
caattccccgatttgagaatataccgactggcatccaacacatagagaagcttgaagttcttcatatttggcttatgcctattgaatctgtgcagcgcat |
200 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27294924 |
caattccccgacttgagaatgtaccgactggcatccaacacatagagaagcttgaagttcttcatatttggcttatgcctattgaatctgtgcagcgcat |
27295023 |
T |
|
| Q |
201 |
ctataccgagtattgaacatctatctaatgtggtggatgc |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27295024 |
ctataccgagtattgaacatctatctaatgtggtggatgc |
27295063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 22036562 - 22036603
Alignment:
| Q |
116 |
agaatataccgactggcatccaacacatagagaagcttgaag |
157 |
Q |
| |
|
|||||||||| ||||||||||||||| | ||||||||||||| |
|
|
| T |
22036562 |
agaatatacccactggcatccaacacttggagaagcttgaag |
22036603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 22117130 - 22117171
Alignment:
| Q |
116 |
agaatataccgactggcatccaacacatagagaagcttgaag |
157 |
Q |
| |
|
|||||||||| ||||||||||||||| | ||||||||||||| |
|
|
| T |
22117130 |
agaatatacccactggcatccaacacttggagaagcttgaag |
22117171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 21947672 - 21947712
Alignment:
| Q |
116 |
agaatataccgactggcatccaacacatagagaagcttgaa |
156 |
Q |
| |
|
|||||||||| ||||||||||||||| | |||||||||||| |
|
|
| T |
21947672 |
agaatatacccactggcatccaacacttggagaagcttgaa |
21947712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 22106756 - 22106796
Alignment:
| Q |
116 |
agaatataccgactggcatccaacacatagagaagcttgaa |
156 |
Q |
| |
|
|||||||||| ||||||||||||||| | |||||||||||| |
|
|
| T |
22106756 |
agaatatacccactggcatccaacacttggagaagcttgaa |
22106796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 22613672 - 22613608
Alignment:
| Q |
130 |
ggcatccaacacatagagaagcttgaagttcttcatatttggcttatgcctattgaatctgtgca |
194 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||| |||||||| |||||| | ||||| |||||| |
|
|
| T |
22613672 |
ggcatccaacacttagagaagcttaaagttctcaatatttgggatatgccaactgaatttgtgca |
22613608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University