View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5892_high_67 (Length: 238)
Name: NF5892_high_67
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_high_67 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 21 - 173
Target Start/End: Complemental strand, 7484092 - 7483940
Alignment:
| Q |
21 |
ataagctttcaagactctcaaactgatgagaacaaccccttgagatttcttcttcgctacagttacaccatcctttaagattatttaacgtacaaaggtt |
120 |
Q |
| |
|
||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | | || |
|
|
| T |
7484092 |
ataaggtttcaagactctgaaactgatgacaacaaccccttgagatttcttcttcgctacacttacaccatcctttaagattatttaactgaaagagaac |
7483993 |
T |
|
| Q |
121 |
tatatatgtgagtgacgcacaaaatgatgatgagttatcactattgttatcat |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7483992 |
tatatatgtgagtgacgcacaaaatgatgatgagttatcactattgctatcat |
7483940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 22 - 173
Target Start/End: Complemental strand, 7522148 - 7521997
Alignment:
| Q |
22 |
taagctttcaagactctcaaactgatgagaacaaccccttgagatttcttcttcgctacagttacaccatcctttaagattatttaacgtacaaaggttt |
121 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| | | || | |
|
|
| T |
7522148 |
taaggtttcaagactctgaaactgatgacaacaaccccttgagatttcttcttcgctacacttacaccatcctttaagattagttaactgaaagagaact |
7522049 |
T |
|
| Q |
122 |
atatatgtgagtgacgcacaaaatgatgatgagttatcactattgttatcat |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7522048 |
atatatgtgagtgacgcacaaaatgatgatgagttatcactattgttatcat |
7521997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 7716480 - 7716637
Alignment:
| Q |
16 |
aatacataagctttcaagactctcaaactgatgagaacaaccccttgagatttcttcttcgctacagttacaccatcctttaagattatttaacgtacaa |
115 |
Q |
| |
|
|||||||||| ||||||| || |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7716480 |
aatacataagttttcaagtctttcaaactgatgacaacagccccttgagatttcttcttcgctacagttacaccatcctttaagattatttaactcggaa |
7716579 |
T |
|
| Q |
116 |
aggtttatatatgtgagtgacgcacaaaatgatgatgagttatcactattgttatcat |
173 |
Q |
| |
|
|| ||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7716580 |
agaaatatatctgtaagtgacgtacaaaatgatgatgagttatcactattgttatcat |
7716637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 7720310 - 7720467
Alignment:
| Q |
16 |
aatacataagctttcaagactctcaaactgatgagaacaaccccttgagatttcttcttcgctacagttacaccatcctttaagattatttaacgtacaa |
115 |
Q |
| |
|
||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | || |
|
|
| T |
7720310 |
aatacataagctttcaagactgttaaactgatgacaacaaccccttgagatttcttcttcgctacagttacaccatccttttagatttgttaacccaaaa |
7720409 |
T |
|
| Q |
116 |
aggtttatatatgtgagtgacgcacaaaatgatgatgagttatcactattgttatcat |
173 |
Q |
| |
|
|| ||||| | | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7720410 |
agaaatatatctttaagtgacgcacaaaatgatgatgagttatcactattgttatcat |
7720467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 21 - 173
Target Start/End: Complemental strand, 7496491 - 7496339
Alignment:
| Q |
21 |
ataagctttcaagactctcaaactgatgagaacaaccccttgagatttcttcttcgctacagttacaccatcctttaagattatttaacgtacaaaggtt |
120 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | | || |
|
|
| T |
7496491 |
ataatctttcaagactctgaaactgatgacgacaaccccttgagatttcttcttcgctacaattacaccatcctttaagattatttaactgaaagagagc |
7496392 |
T |
|
| Q |
121 |
tatatatgtgagtgacgcacaaaatgatgatgagttatcactattgttatcat |
173 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7496391 |
tatatctgtgagtgacgcacaaaatgatgatgagttatcactattgctatcat |
7496339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 173
Target Start/End: Complemental strand, 7530217 - 7530065
Alignment:
| Q |
21 |
ataagctttcaagactctcaaactgatgagaacaaccccttgagatttcttcttcgctacagttacaccatcctttaagattatttaacgtacaaaggtt |
120 |
Q |
| |
|
|||| |||| |||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | || |
|
|
| T |
7530217 |
ataatcttttaagactctgaaactgatgacaacaaccccttgagatttcttcttcgctacacttacaccatcctttaagatttgttaacagaatgagaac |
7530118 |
T |
|
| Q |
121 |
tatatatgtgagtgacgcacaaaatgatgatgagttatcactattgttatcat |
173 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
7530117 |
tatatctgtgagtgacgcacaagatgatgatgagttatcactattgctatcat |
7530065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 7502692 - 7502552
Alignment:
| Q |
10 |
atcatcaatacataagctttcaagactctcaaactgatgagaacaaccccttgagatttcttcttcgctacagttacaccatcctttaagattatttaac |
109 |
Q |
| |
|
||||||||| ||||| ||||| ||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| |
|
|
| T |
7502692 |
atcatcaatcgataagtattcaatactctgagactgatgactacaaccccttgagatttcttctttgctacagttacaccatccttttagatttcttaac |
7502593 |
T |
|
| Q |
110 |
gtacaaaggtttatatatgtgagtgacgcacaaaatgatga |
150 |
Q |
| |
|
| || | | ||||||||||||| |||||||||||||||| |
|
|
| T |
7502592 |
tgagaaggatatatatatgtgagtaacgcacaaaatgatga |
7502552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 7127049 - 7127124
Alignment:
| Q |
21 |
ataagctttcaagactctcaaactgatgagaacaaccccttgagatttcttcttcgctacagttacaccatccttt |
96 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
7127049 |
ataatctttcaagactctgaaactgatgacaacaaccccttgagatctcttcttcgctacacttacaccatccttt |
7127124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 7483867 - 7483813
Alignment:
| Q |
180 |
attgcaatctcgaacagttgactaagttcaattcaaccaaatttgataataaatt |
234 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
7483867 |
attgcaatctcgaacagttgactaagcccaattcaaccaaatttggtaataaatt |
7483813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University