View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_high_7 (Length: 553)
Name: NF5892_high_7
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 19 - 533
Target Start/End: Original strand, 55162074 - 55162588
Alignment:
| Q |
19 |
aatatatcatcaacactgtgagtcagtccaagctaatcttcacttcagcactcacacttcaaattaaaaacaattt-----ggtgtctcataggtaaggt |
113 |
Q |
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| T |
55162074 |
aatatatcatcaacactgtgagtcagtccaagctaatcttcacttcagcactcacacttcaaattaaaaacaatttaatttggtgtctcataggt----- |
55162168 |
T |
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| Q |
114 |
atatattaaaagatatatagaagaatctaattatagttttgtctctctgatttgacagaaaagaaagcgtgccgtcaccgttcatgtatcagaccctaat |
213 |
Q |
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| T |
55162169 |
atatattaaaagatatatagaagaatctaattatagttttgtctctctgatttgacagaaaagaaagcgtgccgtcaccgttcatgtatcagaccctaat |
55162268 |
T |
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| Q |
214 |
ggaaagaaattacaaggagcttctgtgtttgtagagcaaatatcaaaagactttcctattggctctgcgatatcaaagaccattcttggcaacataccat |
313 |
Q |
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| T |
55162269 |
ggaaggaaattacaaggagcttctgtgtttgtagagcaaatatcaaaagactttcctattggctctgcgatagcaaagaccattcttggcaacataccat |
55162368 |
T |
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| Q |
314 |
atcagaattggtttttgaaacggttcaatgctgcagtgtttgaaaacgagcttaaatggtatgccacagagcctcatgaaggcagagtcaactacacaat |
413 |
Q |
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| T |
55162369 |
atcagaattggtttttgaaacggttcaatgctgcagtgtttgaaaacgagcttaaatggtatgccacagagcctcatgaaggcagcgtcaactacacaat |
55162468 |
T |
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| Q |
414 |
ttcagatcaaatgatgcaatttgttagagccaacaaaatcatagctagagggcacaatatattctgggaagaccctaaatacaatcctgcatgggttctt |
513 |
Q |
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| T |
55162469 |
ttcagaccaaatgatgcaatttgttagagccaacaaaatcatagctagagggcacaatatattctgggaagaccctaaatacaatcctgcatgggttctt |
55162568 |
T |
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| Q |
514 |
aaccttacaggtacacagtt |
533 |
Q |
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| T |
55162569 |
aaccttacaggtacacagtt |
55162588 |
T |
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