View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_high_71 (Length: 236)
Name: NF5892_high_71
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_high_71 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 34561560 - 34561780
Alignment:
| Q |
1 |
acttgtcacaaaataaagccaaatcaatgtaccttgacaattgacatgtactgttgtcttcaagagaaaagatttgtttgtagcagctcctttcaaattc |
100 |
Q |
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| T |
34561560 |
acttgtcacaaaataaagccaaatcaatgtaccttgacaattgacatgtactgttgttttcaagagaaaagatttgtttgtagcagctcctttcaaattc |
34561659 |
T |
|
| Q |
101 |
ttaaattgcatcttcaagaaagaaaggcaaaaaatacttacttccaaatgttcaggataagtatatggattgaatgactgcaaaaaggagatccaaacgc |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34561660 |
ttaaattgcatcttcaagaaagaaagacaaaaaatacttacttccaaatgttcaggataagtatatggattgaatgactgcaaaaaggagatccaaacgc |
34561759 |
T |
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| Q |
201 |
agtcataacaatggatatatg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
34561760 |
agtcataacaatggatatatg |
34561780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 34288397 - 34288461
Alignment:
| Q |
128 |
caaaaaatacttacttccaaatgttcaggataagtatatggattgaatgactgcaaaaaggagat |
192 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||| ||||| |
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| T |
34288397 |
caaaaaacccttacttccaaatgttcagggcaagtatatggattgaatgactacaaaaatgagat |
34288461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 135738 - 135681
Alignment:
| Q |
148 |
atgttcaggataagtatatggattgaatgactgcaaaaaggagatccaaacgcagtca |
205 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||| |||| ||| ||||||| |
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| T |
135738 |
atgttcaggacaagtatatggactgaatgactgcaaaaaggcgatcaaaatgcagtca |
135681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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