View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_high_74 (Length: 227)
Name: NF5892_high_74
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_high_74 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 34867725 - 34867949
Alignment:
| Q |
6 |
aaattattatccaggtttcatccctccatcaatatttacaaggactagacattaa---gttaaaaacatcagagatgatgtatttgaaattaagtgatca |
102 |
Q |
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| T |
34867725 |
aaattattatccaggtttcatccctccatcaatatttacaaggactagacattaataagttaaaatcatcagagatgatgtatttgaaattaagtgatca |
34867824 |
T |
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| Q |
103 |
agtctgatatgcatttgataacaaatccaaacgaagcgacaaacttcattagcatttaacaattctagagatcattttgtaatattgatagtatgacgga |
202 |
Q |
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| T |
34867825 |
tgtctgatatgcatttgataacaaattcaaacgaagcgacaaacttcatttgcatttaacaattctagagatcattttgtaatattgatagtatgaccga |
34867924 |
T |
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| Q |
203 |
ctaagttgatacagtcctacgaatc |
227 |
Q |
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| T |
34867925 |
ctaagttgatacagtcctacgaatc |
34867949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 34871440 - 34871501
Alignment:
| Q |
161 |
acaattctagagatcattttgtaatattgatagtatgacggactaagttgatacagtcctac |
222 |
Q |
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| T |
34871440 |
acaattctaaggaccattttgtaatattgatagtatcaaagactaaattgatacagtcctac |
34871501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 40258723 - 40258643
Alignment:
| Q |
111 |
atgcatttgataacaaatccaaacgaagcgacaaacttcattagcatttaacaattctagagatcattttgtaatattgat |
191 |
Q |
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| T |
40258723 |
atgcatttgataacagatccaaacagtgcgacgaacttgattagcatttttcaatttcaaagatcattttgaagtattgat |
40258643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 46187196 - 46187236
Alignment:
| Q |
177 |
ttttgtaatattgatagtatgacggactaagttgatacagt |
217 |
Q |
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| T |
46187196 |
ttttgcaatattgataatatgaaggactaagttgatacagt |
46187236 |
T |
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