View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_low_12 (Length: 482)
Name: NF5892_low_12
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 24 - 435
Target Start/End: Original strand, 48133687 - 48134117
Alignment:
| Q |
24 |
cacaaacttgaaccatacttggtcaaaactcatatggtaagcacatatttctcaatatcatccaacaaatagattgagtacctctttggcatagcgtttt |
123 |
Q |
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| T |
48133687 |
cacaaacttgaaccatacttggtcaaaactcatatggtaagcacatatttctcaatatcatccaacaaatagattgagtacctgtttggcatagcgtttt |
48133786 |
T |
|
| Q |
124 |
ccca-----------ggtttaaaggctgaaacgtggtttcaacattttcttaggtgtttggataactgcaaacgggattctaccaaacgtggttctagcc |
212 |
Q |
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| T |
48133787 |
cccatctcaaacggcggtttaaaagctgaaacgtggtttcaacattttcttaggtgtttggataactgcaaacgggattctaccaaacgtggttctagcc |
48133886 |
T |
|
| Q |
213 |
cccaacgcccgtttttgaaaagctagaaaatgaagcttttgcggcaactcaacaccagtttagaatttaatttatggtgacaaattggaaattccctaat |
312 |
Q |
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| T |
48133887 |
cccaacgcccgtttatgaaaagctagaaaatgaagcttttgcggcaactcaacgccagtttggaatttaatttatggtgacaaattggaaattccctaat |
48133986 |
T |
|
| Q |
313 |
tacccatgacttgttttctattaccgtgttcctttcaacagcacaagccacattgatattgttt--------aatttctcaatcgtaaggacagagaaga |
404 |
Q |
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| T |
48133987 |
tacccatgacttgttttctattaccgtgttcctttcaacagcacaagccacattgatattgtttaatttctcaatttctcaattgtaaggacaaataaga |
48134086 |
T |
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| Q |
405 |
ttttcgtttcattactgtgatgatttttaca |
435 |
Q |
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| T |
48134087 |
ttttcgtttcattacagtgatgatttataca |
48134117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 130 - 372
Target Start/End: Complemental strand, 4069237 - 4068994
Alignment:
| Q |
130 |
tttaaaggctgaaacgtggtttcaacattttcttaggtgtttggataactgcaaacgggattctaccaaacgtggttctagccccc-aacgcccgttttt |
228 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| | |
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| T |
4069237 |
tttaaaggctcaaacatggtttcaacattttcttaggtgtttggataactgcaaacgggattctagcaaacgtggttctagccccccaacgcccgtttct |
4069138 |
T |
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| Q |
229 |
gaaaagctagaaaatgaagcttttgcggcaactcaacaccagtttagaatttaatttatggtgacaaattggaaattccctaattacccatgacttgttt |
328 |
Q |
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| T |
4069137 |
gaaaagctagaaaatgaagcttttgcggcaactcaacaccagtttgaaatttaatttatggtgacaaattgaaaattccctaattacccatgacttgttt |
4069038 |
T |
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| Q |
329 |
tctattaccgtgttcctttcaacagcacaagccacattgatatt |
372 |
Q |
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| T |
4069037 |
tctattaccgtgttcatttcaacaacacaagccgcattgatatt |
4068994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 4068980 - 4068952
Alignment:
| Q |
357 |
aagccacattgatattgtttaatttctca |
385 |
Q |
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| T |
4068980 |
aagccacattgatattgtttaatttctca |
4068952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 212 - 387
Target Start/End: Complemental strand, 31563512 - 31563339
Alignment:
| Q |
212 |
ccccaacgcccgtttttgaaaagctagaaaatgaagcttttgcggcaactcaacaccagtttagaatttaatttatggtgacaaattggaaattccctaa |
311 |
Q |
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||||||||||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||| ||| |
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| T |
31563512 |
ccccaacgcccgtttctaaaaagctagaaaatgaaccttttgcggcaactcaacgccagtttggaatttaatttatggtgataaattggaaattccttaa |
31563413 |
T |
|
| Q |
312 |
ttacccatgacttgttttctattaccgtgttcctttcaacagcacaagccacattgatattgtttaatttctcaat |
387 |
Q |
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| T |
31563412 |
ttacccatgacttgttttc--ttaccgtgttgctttcaacatcaaaagccacattgatattgtttaatttctcaat |
31563339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 31563575 - 31563518
Alignment:
| Q |
128 |
ggtttaaaggctgaaacgtggtttcaacattttcttaggtgtttggataactgcaaacg |
186 |
Q |
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| T |
31563575 |
ggtttaaacgccgaaacgtggtttcaacattt-cttagatgtttggataactgcaaacg |
31563518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 435
Target Start/End: Complemental strand, 31563321 - 31563275
Alignment:
| Q |
389 |
gtaaggacagagaagattttcgtttcattactgtgatgatttttaca |
435 |
Q |
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| T |
31563321 |
gtaaggacatagaagattttcgtttcattacagtgatgatttataca |
31563275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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