View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_low_13 (Length: 474)
Name: NF5892_low_13
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 243 - 361
Target Start/End: Complemental strand, 28533187 - 28533069
Alignment:
| Q |
243 |
tgttgggaatgtatattcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcagcttgagttctctctccaccgtatccaaacggttcc |
342 |
Q |
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| T |
28533187 |
tgttgggaatgtatcttcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcaacttgagttctctctccaccgtatccaaacggttcc |
28533088 |
T |
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| Q |
343 |
tctccatcaccggccgcct |
361 |
Q |
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| T |
28533087 |
tctccatcaccggacgcct |
28533069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 359 - 454
Target Start/End: Complemental strand, 28533029 - 28532934
Alignment:
| Q |
359 |
cctacgtagcctcttcaaaaggttcacccatctcaattccctcaatctctctcgctatctcggtcacaacctcgacgtccttctctgccaaatctc |
454 |
Q |
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| T |
28533029 |
cctacttagcctcttcaaaaggttcacccatctcaatttcctcgatctctctcgctatctaggtaacaacctcgacgaccttctctgccaaatctc |
28532934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 353
Target Start/End: Original strand, 51763081 - 51763191
Alignment:
| Q |
243 |
tgttgggaatgtatattcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcagcttgagttctctctccaccgtatccaaacggttcc |
342 |
Q |
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| T |
51763081 |
tgttgggaatctatcttcaaattcatcatcaacaatgatgatgacgaagaaaacaaccgtcgcaacttgaattctctctccatcgtttccaaacagttcc |
51763180 |
T |
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| Q |
343 |
tctccatcacc |
353 |
Q |
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| T |
51763181 |
tctccatcacc |
51763191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 359
Target Start/End: Original strand, 6587982 - 6588056
Alignment:
| Q |
285 |
gacgaaaacaacaaccgtcgcagcttgagttctctctccaccgtatccaaacggttcctctccatcaccggccgc |
359 |
Q |
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| T |
6587982 |
gacgaaaacaacaaccgtcacagcatgatttctctctccgccgtatccaagcagttcctcgccatcaccgaccgc |
6588056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 461
Target Start/End: Original strand, 6588144 - 6588215
Alignment:
| Q |
390 |
ctcaattccctcaatctctctcgctatctcggtcacaacctcgacgtccttctctgccaaatctctcgtttc |
461 |
Q |
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| T |
6588144 |
ctcacttccctcaatctctcgcgatatagcggttatgacctcgacgaccttctttgccaaatctctcgtttc |
6588215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 14810081 - 14810035
Alignment:
| Q |
229 |
atttacctgatgagtgttgggaatgtatattcagattcatcatcaac |
275 |
Q |
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| T |
14810081 |
atttacctgatgagtgttgggaacgtgtctttagattcatcatcaac |
14810035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 1537252 - 1537299
Alignment:
| Q |
229 |
atttacctgatgagtgttgggaatgtatattcagattcatcatcaacg |
276 |
Q |
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| T |
1537252 |
atttacctgatgagtgttgggaatgtgtattcagattcctcaacaacg |
1537299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 322
Target Start/End: Original strand, 53759964 - 53760058
Alignment:
| Q |
225 |
tcagatttacctgatgagtgttgggaatgtatattcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcagcttgagttctctctc |
322 |
Q |
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|||||||||||||||||||| ||||||| ||| |||| | || |||||||| || | |||| ||||||||||||||| || ||||| ||||||||| |
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| T |
53759964 |
tcagatttacctgatgagtgctgggaatctatcttcaaactcgtcatcaacaac---aaggacaaaaacaacaaccgtcacaacttgaattctctctc |
53760058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 1547374 - 1547426
Alignment:
| Q |
229 |
atttacctgatgagtgttgggaatgtatattcagattcatcatcaacgacggt |
281 |
Q |
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|||||||||| ||||||||||||| ||| |||| ||||||||||| ||||||| |
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| T |
1547374 |
atttacctgacgagtgttgggaatctatcttcaaattcatcatcatcgacggt |
1547426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 15091285 - 15091334
Alignment:
| Q |
229 |
atttacctgatgagtgttgggaatgtatattcagattcatcatcaacgac |
278 |
Q |
| |
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||||||| ||||||||||||||||| | ||||||||||||||||||||| |
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| T |
15091285 |
atttacccgatgagtgttgggaatgcgtcttcagattcatcatcaacgac |
15091334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 10167233 - 10167277
Alignment:
| Q |
225 |
tcagatttacctgatgagtgttgggaatgtatattcagattcatc |
269 |
Q |
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| T |
10167233 |
tcagatttacctgacgaatgttgggaattgatattcagattcatc |
10167277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 261
Target Start/End: Complemental strand, 10616245 - 10616213
Alignment:
| Q |
229 |
atttacctgatgagtgttgggaatgtatattca |
261 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
10616245 |
atttacctgatgagtgttgggaatgtatcttca |
10616213 |
T |
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