View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_low_19 (Length: 422)
Name: NF5892_low_19
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 422
Target Start/End: Original strand, 45929562 - 45929966
Alignment:
| Q |
18 |
gttaggtcattgaaaacacacttgtctgaattggtgatatgatatgtatttattttatgccaatgcttcactcataatagtgctcttgtccttctgctgt |
117 |
Q |
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| T |
45929562 |
gttaggtcattgaaaacacacttgtctgaattggtgatatgatatgtatttattttatgccaatgcttcactcataatagtgctcttgtccttctgctgt |
45929661 |
T |
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| Q |
118 |
gagataaaaaattgtcctatctttttgagcaagcagttttctactctttatttctttcttttgatcgatcactatgactttgtctgtatgcatatgttct |
217 |
Q |
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| T |
45929662 |
gagataaaaaatagtcctatctttttgagcaagcagttttctactctttatttctttcttttgatcgatcactatgactttgtctgtatgcatatgttct |
45929761 |
T |
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| Q |
218 |
ggtaaaaggccggttaaaagaagtgtcaagtttggtcaaaaaagtttgacaaaattttgaacacttgtgctttacaatggaggatactattgaaattgca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45929762 |
ggtaaaaggccggttaaaagaagtgtcaagtttggtcaaaaaagtttgacaaaattttgaacacttgtgctttacaatggaggatactattgaaattgca |
45929861 |
T |
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| Q |
318 |
gcttagaaaatatgggctttgcagatcctatcattagctagcctaccttcacatgtctgagatttgcagaaagtttgcaattacagcaaaatcactggaa |
417 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45929862 |
gcttagaaaatatgggctttgcagatcgtatcattagctagcctaccttcacatgtctgagatttgcagaaagtttgcacttacagcaaaatcactggaa |
45929961 |
T |
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| Q |
418 |
aatcc |
422 |
Q |
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| T |
45929962 |
aatcc |
45929966 |
T |
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