View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5892_low_28 (Length: 357)
Name: NF5892_low_28
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_low_28 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] scaffold0156 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 12 - 357
Target Start/End: Original strand, 21376131 - 21376476
Alignment:
| Q |
12 |
gaatatcgaaaaaagaatgatttctattttattattgagaaaatgcaatcttgtcttgcttcttggaagaatagactgttaaacaaacctggaagaatga |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
21376131 |
gaatagcgaaaaaagaatgatttctattttattattgagaaaaagcaatcttgtcttgcttcttggaagaataaactgttaaacaaatctggaagaatga |
21376230 |
T |
|
| Q |
112 |
ctcttttctcctctgttctctcctctattcctccatattatatggaaattttttggcttcctcaatcaatttgtagtcgcattgatcaaacaaccaggaa |
211 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21376231 |
ctcttgcctcctctgttctctcctctattcctccatattatatggaatttttttggcttcctcaatcaatttgtaatcgcattgatcaaacaaccaggaa |
21376330 |
T |
|
| Q |
212 |
tttcatctggaaaggttcaaatgataaaggcatttatctggtaggttggaaaaaactacccgtcccatgactcttggtggcctttgaatcaggagagcca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21376331 |
tttcatctggaaaggttcaaatgataaaggcattcatctggtaggttggaaaaaactacccgtcccatgactcttggtggcctttgaatcaggagagcca |
21376430 |
T |
|
| Q |
312 |
gggaattgaatacttgccttcttggaaagcttgtttgggatttgat |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21376431 |
gggaattgaatacttgccttcttggaaagcttgtttgggatttgat |
21376476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 266
Target Start/End: Complemental strand, 12645650 - 12645404
Alignment:
| Q |
21 |
aaaaagaa-tgatttctattttattattgagaaaatgcaatcttgtcttgcttcttggaagaatagactgttaaacaaacctggaagaatgactcttttc |
119 |
Q |
| |
|
|||||||| ||||||| |||||| ||||| ||||||||||| |||||||||||||||| | || | |||| ||||| | |||||| | |||||| |
|
|
| T |
12645650 |
aaaaagaagtgatttcctttttatcattgacaaaatgcaatcaagtcttgcttcttggaaaagtaaattgttgaacaaggcgggaagattaactcttgca |
12645551 |
T |
|
| Q |
120 |
tcctctgttctctcctctattcctccatattatatggaaattttttggcttcctcaatcaatttgtagtcgcattgatcaaacaaccaggaatttcatct |
219 |
Q |
| |
|
|| || |||||||| || || ||| | ||||| ||| ||||| |||||| ||||||| |||||| |||||||||||| || || |||||||| | |
|
|
| T |
12645550 |
tcttcggttctctcttccatcccttcctattacatgcaaattgtttggcatcctcaaagtatttgtgacaacattgatcaaactactagaaatttcattt |
12645451 |
T |
|
| Q |
220 |
ggaaaggttcaaatgataaaggcatttatctggtaggttggaaaaaa |
266 |
Q |
| |
|
||| || | ||| | |||||||||||||| || |||||||||||| |
|
|
| T |
12645450 |
ggagagatgcaagcaacaaaggcatttatctagttggttggaaaaaa |
12645404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 35062781 - 35062718
Alignment:
| Q |
26 |
gaatgatttctattttattattgagaaaatgcaatcttgtcttgcttcttggaagaatagactg |
89 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| | | |||||||||||||||||||||||| |
|
|
| T |
35062781 |
gaatgatttttattttattattgagaaaatgcaatatagacttgcttcttggaagaatagactg |
35062718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 261
Target Start/End: Complemental strand, 35062642 - 35062546
Alignment:
| Q |
165 |
tggcttcctcaatcaatttgtagtcgcattgatcaaacaaccaggaatttcatctggaaaggttcaaatgataaaggcatttatctggtaggttgga |
261 |
Q |
| |
|
||||||| |||||||||||| | |||||||| |||||||||| ||||| || | || ||| |||||||| ||||| || ||||||||||||||| |
|
|
| T |
35062642 |
tggcttctccaatcaatttgtgatagcattgataaaacaaccagaaatttaatttagagaggctcaaatgacaaaggtatccatctggtaggttgga |
35062546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 342
Target Start/End: Complemental strand, 1353462 - 1353140
Alignment:
| Q |
21 |
aaaaagaatgatttctattttattattgagaaaatgcaatcttgtcttgcttcttggaagaatagactgttaaacaaacctggaagaatgactcttttct |
120 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||| | | | | || ||||| |||||| |||| || ||||||| ||| | |||||| | | |
|
|
| T |
1353462 |
aaaaggaataatttctattttattattgagaaaatgcaaacaagattggtatcctggaataatagattgttgaataaacctgatagattaactcttcttt |
1353363 |
T |
|
| Q |
121 |
cctctgttctctcctctattcctccatattatatggaaattttttggcttcctcaatcaatttgtagtcgcattgatcaaacaaccaggaatttcatctg |
220 |
Q |
| |
|
| ||| || | ||||| ||||| | ||||| ||| | ||| |||| |||||||||| |||||| ||||||||||||||| || |||||||| | |
|
|
| T |
1353362 |
cttctattatttcctccattccatcttattacatgcagattagttggtttcctcaatccatttgtgaaaacattgatcaaacaactagaaatttcattta |
1353263 |
T |
|
| Q |
221 |
gaaaggttcaaatgataaaggcatttatctggtaggttggaaaaa-actacccgtcccatgactcttggtggcctttgaatcaggagagccagggaattg |
319 |
Q |
| |
|
|| | || ||||||||||| ||||| || | |||||||||||||| | | | ||||| | |||||||||||||| ||||||| ||| ||||| | |
|
|
| T |
1353262 |
gagaagtacaaatgataaaagcattcatttagtaggttggaaaaagatttctcgtcctaaatctcttggtggccttggaatcagatcagctagggaggcg |
1353163 |
T |
|
| Q |
320 |
aatacttgccttcttggaaagct |
342 |
Q |
| |
|
|||||||||||| | |||||||| |
|
|
| T |
1353162 |
aatacttgccttttaggaaagct |
1353140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 27781285 - 27781206
Alignment:
| Q |
37 |
attttattattgagaaaatgcaatcttgtcttgcttcttggaagaatagactgttaaacaaacctggaagaatgactctt |
116 |
Q |
| |
|
||||| ||||||| |||||||| || ||||||||| ||||||||| | | ||||||| |||||||||||| || ||||| |
|
|
| T |
27781285 |
attttgttattgacaaaatgcatactcgtcttgcttattggaagaacaaattgttaaataaacctggaagattggctctt |
27781206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 27153729 - 27153857
Alignment:
| Q |
27 |
aatgatttctattttattattgagaaaatgcaatcttgtcttgcttcttggaagaatagactgttaaacaaacctggaagaatgactcttttctcctctg |
126 |
Q |
| |
|
||||| ||| ||||||||||||| ||| ||||||| | | ||| ||||||||| | || ||||||| ||||| ||||| ||||||||| || |||| |
|
|
| T |
27153729 |
aatgacttccattttattattgaaaaattgcaatccagacctgcctcttggaagcacaggttgttaaataaaccaggaagtatgactcttgcatcttctg |
27153828 |
T |
|
| Q |
127 |
ttctctcctctattcctccatattatatg |
155 |
Q |
| |
|
|||| ||||| ||||| | ||||||||| |
|
|
| T |
27153829 |
ttctttcctccattccctcttattatatg |
27153857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 9535188 - 9535278
Alignment:
| Q |
26 |
gaatgatttctattttattattgagaaaatgcaatcttgtcttgcttcttggaagaatagactgttaaacaaacctggaagaatgactctt |
116 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||| | || |||| ||||||||||||| || |||||||||||| ||| |||||||| |
|
|
| T |
9535188 |
gaatgatttttattttattattgagataatgcaattcagactcgctttttggaagaatagattgctaaacaaacctgatagattgactctt |
9535278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0156 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0156
Description:
Target: scaffold0156; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 17774 - 17722
Alignment:
| Q |
30 |
gatttctattttattattgagaaaatgcaatcttgtcttgcttcttggaagaa |
82 |
Q |
| |
|
||||||||||||||||||||||||||| || || | ||||||||||||||||| |
|
|
| T |
17774 |
gatttctattttattattgagaaaatgtaaactagacttgcttcttggaagaa |
17722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 6640573 - 6640479
Alignment:
| Q |
132 |
tcctctattcctccatattatatggaaattttttggcttcctcaatcaatttgtagtcgcattgatcaaacaaccaggaatttcatctggaaagg |
226 |
Q |
| |
|
||||| |||||| |||| |||||| | ||| ||||||||||||| |||||| | | ||||||||||||||| | ||||||||||||||||| |
|
|
| T |
6640573 |
tcctccattcctacatactatatgcagattaattggcttcctcaaaatatttgtgatagtattgatcaaacaacccgcaatttcatctggaaagg |
6640479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University