View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5892_low_3 (Length: 738)

Name: NF5892_low_3
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5892_low_3
NF5892_low_3
[»] chr7 (1 HSPs)
chr7 (13-720)||(41701556-41702288)


Alignment Details
Target: chr7 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 13 - 720
Target Start/End: Original strand, 41701556 - 41702288
Alignment:
Q  13 aatatgatacaatgtcaacaataaagtgtcgctaattcgagtcaatagtcctccaatagaggggaacatgtggggaaaaaagttagcaagtggtgtatat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41701556 aatatgatacaatgtcaacaataaagtgtcgctaattcgagtcaatagtcctccaatagaggggaacatgtggggaaaaaagttagcaagtggtgtatat 41701655  T
Q  113 tcatcatttattggtttgannnnnnnnnnnnnnnggagaatctagtatatatatgcagatgataagtgatgggtgattgataagtatccatgactttaga 212  Q
    |||| ||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41701656 tcatgatttattggtttgatttttttttttt---ggagaatctagtatatatatgcagatgataagtgatgggtgattgataagtatccatgactttaga 41701752  T
Q  213 ttaagtnnnnnnnnnnn-tcaacctttggaggacttttctgtaaaaaatcgcacataatccttcatggattagactaatcataaccatggtggtgctttc 311  Q
    ||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41701753 ttaagtaaaaaaaaaaaatcaacctttggaggacttttctgtaaaaaatcgcacataatccttcatggattagactaatcataaccatggtggtgctttc 41701852  T
Q  312 ctactataagaaaatgaaatttccattttaaaaactc------aaacactttccttagttgcaaaaggaagaccactttggaggacaatacaaaccattc 405  Q
    |||||||||||||||||||||||||||||||||  |       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41701853 ctactataagaaaatgaaatttccattttaaaactttgagtgaaaacactttccttagttgcaaaaggaagaccactttggaggacaatacaaaccattc 41701952  T
Q  406 caaatattctaatacttgcatatacttttgaatattatagttcatattatctaaagaagatggcatatgattctaatgtttctttgtcatcgaatcaaaa 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41701953 caaatattctaatacttgcatatacttttgaatattatagttcatattatctaaagaagatggcatatgattctaatgtttctttgtcatcgaatcaaaa 41702052  T
Q  506 ccagttttggaatcactttacttcctttctcagtgggctgcacattatcgttcaaagactccatttgcacattgttacatatatcaatac---------- 595  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  41702053 ccagttttggaatcactttacttcctttctcagtgggctgcacattatcgttcaaagactccatttgcacattgttacatatatcaatacaaccaagttt 41702152  T
Q  596 -----------aaccaagagaaatgatattttcaaacacaagtttgacaacaaaaatcaacaataatttgaatggttaacgccatttaaatatatgatta 684  Q
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41702153 tcagcataaataaccaagagaaatgatattttcaaacacaagtttgacaacaaaaatcaacaataatttgaatggttaacgccatttaaatatatgatta 41702252  T
Q  685 tttaataaatataacaatgtatcacaactcgttcat 720  Q
    ||||||||||||||||||||||||||||||||||||    
T  41702253 tttaataaatataacaatgtatcacaactcgttcat 41702288  T

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