View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5892_low_30 (Length: 325)

Name: NF5892_low_30
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5892_low_30
NF5892_low_30
[»] chr6 (2 HSPs)
chr6 (20-310)||(10029837-10030127)
chr6 (100-224)||(4038684-4038808)
[»] chr7 (2 HSPs)
chr7 (46-229)||(33274219-33274402)
chr7 (97-224)||(3160216-3160343)
[»] chr4 (3 HSPs)
chr4 (92-151)||(47101348-47101407)
chr4 (97-156)||(1726251-1726310)
chr4 (97-143)||(2428679-2428725)
[»] chr1 (2 HSPs)
chr1 (101-156)||(30641786-30641841)
chr1 (97-149)||(44331788-44331840)
[»] chr8 (1 HSPs)
chr8 (97-227)||(35665872-35666002)
[»] chr2 (1 HSPs)
chr2 (97-143)||(44648686-44648732)


Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 310
Target Start/End: Complemental strand, 10030127 - 10029837
Alignment:
Q  20 gagaagcgagaggggaatcataagaaacatgtgtgacgaagttggtacgagttttggaaccgcgaagaagtgtcgcggcttcatcataagctcttgctgc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10030127 gagaagcgagaggggaatcataagaaacatgtgtgacgaagttggtacgagttttggaaccgcgaagaagtgtcgcggcttcatcataagctcttgctgc 10030028  T
Q  120 ttcctcagctgtttcaaatgttccaagccacattcttatgttttgtgttgtgtcctttatctcagcaacatatctacctgatggtctttgtctcacccca 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10030027 ttcctcagctgtttcaaatgttccaagccacattcttatgttttgtgttgtgtcctttatctcagcaacatatctacctgatggtctttgtctcacccca 10029928  T
Q  220 acaaacttgtctcttgtttcactctttttgtttctccctttgaatttgttaaccttttttggtctcaaactcttctttggttcatcaaatt 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10029927 acaaacttgtctcttgtttcactctttttgtttctccctttgaatttgttaaccttttttggtctcaaactcttctttggttcatcaaatt 10029837  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 224
Target Start/End: Complemental strand, 4038808 - 4038684
Alignment:
Q  100 tcatcataagctcttgctgcttcctcagctgtttcaaatgttccaagccacattcttatgttttgtgttgtgtcctttatctcagcaacatatctacctg 199  Q
    |||||||||||||| || ||||| |||||||| ||||| ||||| | ||| | |||||| |||||  | || || || |||||||||||  ||||||| |    
T  4038808 tcatcataagctctagcagcttcttcagctgtatcaaaagttcctaaccaaactcttatcttttgaatggtatctttaatctcagcaacccatctacccg 4038709  T
Q  200 atggtctttgtctcaccccaacaaa 224  Q
    |||| |||||||  || ||||||||    
T  4038708 atggcctttgtcgaacgccaacaaa 4038684  T

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Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 46 - 229
Target Start/End: Original strand, 33274219 - 33274402
Alignment:
Q  46 acatgtgtgacgaagttggtacgagttttggaaccgcgaagaagtgtcgcggcttcatcataagctcttgctgcttcctcagctgtttcaaatgttccaa 145  Q
    ||||| |||| ||||||||| ||||| || ||||| ||||||||    || ||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  33274219 acatgagtgatgaagttggttcgagtgttcgaacctcgaagaaggcatgcagcttcatcataagctctagctgcttcctcagctgtctcaaatgttccaa 33274318  T
Q  146 gccacattcttatgttttgtgttgtgtcctttatctcagcaacatatctacctgatggtctttgtctcaccccaacaaacttgt 229  Q
    ||||||||||||| || || |||||||| || |||||||| ||  |||| |||||||| ||||| || || |||||||||||||    
T  33274319 gccacattcttatcttctgagttgtgtctttgatctcagctacccatctccctgatggcctttgcctaacaccaacaaacttgt 33274402  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 224
Target Start/End: Complemental strand, 3160343 - 3160216
Alignment:
Q  97 gcttcatcataagctcttgctgcttcctcagctgtttcaaatgttccaagccacattcttatgttttgtgttgtgtcctttatctcagcaacatatctac 196  Q
    ||||||||||| |||||||| ||||| |||||||| ||||| ||||| | ||| | |||||| || ||  | || || ||||||||||| ||  |||| |    
T  3160343 gcttcatcataggctcttgcagcttcttcagctgtatcaaaagttcctaaccaaactcttatcttctgaatggtatcttttatctcagctacccatcttc 3160244  T
Q  197 ctgatggtctttgtctcaccccaacaaa 224  Q
    ||||||| ||||||||||| ||||||||    
T  3160243 ctgatggcctttgtctcacaccaacaaa 3160216  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 47101348 - 47101407
Alignment:
Q  92 tcgcggcttcatcataagctcttgctgcttcctcagctgtttcaaatgttccaagccaca 151  Q
    |||| |||| |||||| |||||||||||||| || ||||||||||||||||| |||||||    
T  47101348 tcgcagcttgatcatatgctcttgctgcttcttctgctgtttcaaatgttcctagccaca 47101407  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 1726310 - 1726251
Alignment:
Q  97 gcttcatcataagctcttgctgcttcctcagctgtttcaaatgttccaagccacattctt 156  Q
    ||||||||||| ||||||||||| || || ||||||||||||||||| | ||| ||||||    
T  1726310 gcttcatcatatgctcttgctgcatcttctgctgtttcaaatgttcctaaccatattctt 1726251  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 2428679 - 2428725
Alignment:
Q  97 gcttcatcataagctcttgctgcttcctcagctgtttcaaatgttcc 143  Q
    ||||||||||| ||||| |||||||| |||||||| |||||||||||    
T  2428679 gcttcatcatatgctctagctgcttcttcagctgtctcaaatgttcc 2428725  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 30641841 - 30641786
Alignment:
Q  101 catcataagctcttgctgcttcctcagctgtttcaaatgttccaagccacattctt 156  Q
    |||||||||||||||| ||||  ||||| || ||||||||||||||||| ||||||    
T  30641841 catcataagctcttgcagcttgttcagcagtatcaaatgttccaagccatattctt 30641786  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 44331788 - 44331840
Alignment:
Q  97 gcttcatcataagctcttgctgcttcctcagctgtttcaaatgttccaagcca 149  Q
    |||||||| ||||||||||||||  | || || ||||||||||||||||||||    
T  44331788 gcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttccaagcca 44331840  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 227
Target Start/End: Complemental strand, 35666002 - 35665872
Alignment:
Q  97 gcttcatcataagctcttgctgcttcctcagctgtttcaaatgttccaagccacattcttatgttttgtgttgtgtcctttatctcagcaacatatctac 196  Q
    |||||||| |||||||  || ||||||||||| |||| | | || ||||||||||| || ||||| | || |||||| |||||||| ||  |  || | |    
T  35666002 gcttcatcgtaagctcgagcagcttcctcagcagttttataggtaccaagccacatcctaatgttctttgatgtgtcttttatctctgctgcccattttc 35665903  T
Q  197 ctgatggtctttgtctcaccccaacaaactt 227  Q
    |||| | |||||||||||| |||||||||||    
T  35665902 ctgaagctctttgtctcactccaacaaactt 35665872  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 44648686 - 44648732
Alignment:
Q  97 gcttcatcataagctcttgctgcttcctcagctgtttcaaatgttcc 143  Q
    ||||||||||| ||| | |||||||| ||||||||||||||||||||    
T  44648686 gcttcatcatatgctttagctgcttcttcagctgtttcaaatgttcc 44648732  T

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