View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_low_31 (Length: 323)
Name: NF5892_low_31
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 41033228 - 41033523
Alignment:
| Q |
11 |
cacagatgttcaaggtaacctgaaaagcnnnnnnnattcgtttgaaatgtacttagttaacccttcatctcctcctataaattggggtgagcaagaaagt |
110 |
Q |
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| T |
41033228 |
cacagatgttcaaggtaacctgaaaagttttttttattcgtttgaaatgtacttagttaacccttcatctcctcctataaattggggtgagcaagaaagt |
41033327 |
T |
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| Q |
111 |
aagtggcaagcagtccttcaaagaagtcttagtttctttagtgcgctttagtactctcaagtccttttttagttatatataccatactatatgtctgatt |
210 |
Q |
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| T |
41033328 |
aagtggcaagcagtccttcaaagaaatcttagtttctttagtgcgctttagtactctcaagtccttttttagttatatataccatactatatgtctgatt |
41033427 |
T |
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| Q |
211 |
atttcaaccttatgtgttaatataatgtggataaaatttataaaatatgttgagttatatatcactgaatattccgtaatagtatttggcaagtaac |
307 |
Q |
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| T |
41033428 |
atttcaaccttatgtgttaataaaatgtggataaaatttataaaatatgttga-ctatatatcactgaatattcagtaatagtatttggcaagtaac |
41033523 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 41127498 - 41127538
Alignment:
| Q |
80 |
tcctcctataaattggggtgagcaagaaagtaagtggcaag |
120 |
Q |
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| T |
41127498 |
tcctcctataaaatggggtgaccaagaaagtaagtggcaag |
41127538 |
T |
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