View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_low_32 (Length: 319)
Name: NF5892_low_32
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 30225289 - 30224983
Alignment:
| Q |
1 |
tatttatattattgttattttcttgcactgcannnnnnnnnnctattcaccatgattttatattattagctgttataaccctgtctggcttacgatagtt |
100 |
Q |
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| T |
30225289 |
tatttatattattgttattttcttgcactgcattttttttttctattcaccatgattttatattattagctgttataatcctgtctggcttacgatagtt |
30225190 |
T |
|
| Q |
101 |
caaatattatttcttcttgcccactacactttatcaagctagtgtaagtgtaaccctaatctttttaactaaccaatctatttatattcctaataactca |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30225189 |
caaatattatttcttcttgcccactgcactttatcaagctagtgtaagtgtaaccctaatctttttaactaaccaatctatttatattcctaataactca |
30225090 |
T |
|
| Q |
201 |
aggttatgttcttcattggtcgtctagggcgaacacctttatcttcaccaaagctcacctgagaagtggatacgacctttgattttgattttttctttgg |
300 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
30225089 |
aggttatgttcttcattggtcgtctgggacgaacacctttatcttcaccaaagctcacttgagaagtggatacgacctttgattttgatttgttctttgg |
30224990 |
T |
|
| Q |
301 |
tgtccta |
307 |
Q |
| |
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||||||| |
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| T |
30224989 |
tgtccta |
30224983 |
T |
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