View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_low_38 (Length: 268)
Name: NF5892_low_38
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 13833918 - 13833664
Alignment:
| Q |
1 |
aagcagaaactcccgagtttataaattgtcactaattagatgtcttaggcaatgcaatcactttatttcccagactatgggggataagtgcaaggtaata |
100 |
Q |
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||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
13833918 |
aagcataaactcccgagtttctaaattgtcactgattagatgtcttaggcaatgcaatcactttatttcccagactatggatgataagtgcaaggtaata |
13833819 |
T |
|
| Q |
101 |
acctacaattttgtcggttatcaatggtgtgcgttggtgactcgtatgttctttcgttagtcccttcctgctcctttcccttggtgtcccttggtgcctt |
200 |
Q |
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|||||||| |||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
13833818 |
acctacaagtttgtcagttatcaatggtgtgcgttggtggctcgtatgtcctttcgttagtcccttccttctcatttcccttggtgtcccttggtgcctt |
13833719 |
T |
|
| Q |
201 |
ggaaggcagacttcttgactcatgccgatctcgcctctgatcttgctcataacct |
255 |
Q |
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| T |
13833718 |
ggaaggcagacttcttggctcatgccgatctcgtctctgatcttgctcataacct |
13833664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 47900847 - 47900892
Alignment:
| Q |
80 |
ggggataagtgcaaggtaataacctacaattttgtcggttatcaat |
125 |
Q |
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| T |
47900847 |
ggggataagtgcaacgtgataacctacaaatttgtcggttatcaat |
47900892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 25992442 - 25992481
Alignment:
| Q |
23 |
aaattgtcactaattagatgtcttaggcaatgcaatcact |
62 |
Q |
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| T |
25992442 |
aaatagtcaccaattagatgtcttaggcaatgcaatcact |
25992481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 1781438 - 1781527
Alignment:
| Q |
21 |
ataaattgtcactaattagatgtcttaggcaatgcaatcactttatttccca--gactatgggggataagtgcaaggtaataacctacaa |
108 |
Q |
| |
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|||||| |||||| ||||||||| ||||| || ||||||||| ||||| | || |||||||||||||||||| ||||||||||||| |
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| T |
1781438 |
ataaatggtcactgattagatgttataggccattcaatcacttaatttcttatcgattatgggggataagtgcaatataataacctacaa |
1781527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 25136788 - 25136756
Alignment:
| Q |
92 |
aaggtaataacctacaattttgtcggttatcaa |
124 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
25136788 |
aaggtaataacctacatttttgtcggttatcaa |
25136756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 42525246 - 42525202
Alignment:
| Q |
80 |
ggggataagtgcaaggtaataacctacaattttgtcggttatcaat |
125 |
Q |
| |
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| T |
42525246 |
ggggataagtgcaaggtaataaccaac-attttgtaggttatcaat |
42525202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 28870976 - 28870943
Alignment:
| Q |
92 |
aaggtaataacctacaattttgtcggttatcaat |
125 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| |
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| T |
28870976 |
aaggtaataacctacatttttgtcggttatcaat |
28870943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 125
Target Start/End: Original strand, 9354009 - 9354042
Alignment:
| Q |
92 |
aaggtaataacctacaattttgtcggttatcaat |
125 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
9354009 |
aaggtaataacctacatttttgtcggttatcaat |
9354042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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