View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_low_4 (Length: 730)
Name: NF5892_low_4
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 28231754 - 28231363
Alignment:
| Q |
1 |
attaaacgctatacaatgaatgtcattcgatacaaatgttttttactcaaagtagagtttcgttttgaaagtaaattaacaaaaatctacggtctttatg |
100 |
Q |
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| T |
28231754 |
attaaacgctatacaatgaatgtcattcaatacaaatgttttttactcaaagtagagtttcgttttgaaagtaaattaacaaaaatctacggtctttatg |
28231655 |
T |
|
| Q |
101 |
aaatggtaaattggtaagatacccaagtagaaaagaaaatcaaagctgaaaagaaatacattagaaatggaaaattgacggttaacacttgaagacttgg |
200 |
Q |
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| T |
28231654 |
aaatggtaaattggtaagatacccaagtagaaaagaaaatcaaagctgaaaagaaatacattagaaatggaaaattgacggttaacacttgaagacttgg |
28231555 |
T |
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| Q |
201 |
acgtaaattctaaaatatgccatttatgaagaactttgatacataaattgcttttctattagttgataataaagtttggtataactaaatatgtggtccc |
300 |
Q |
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| T |
28231554 |
acgtaaattctaaaatatgccatttatgaagaattttgatacataaattgcttttctattagttgataataaagtttggtataactaaatatgtggtccc |
28231455 |
T |
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| Q |
301 |
ttctatattatattgttacgtttaaaatttataggcacagctatgagatatatatagggctctataaatattaccaaaagtttcaaaatttccc |
394 |
Q |
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| T |
28231454 |
ttctatattatattgttacgtttaaaatttataggcacagctatgagata--tatagggctctataaatattagcaaaagtttcaaaatttccc |
28231363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 411 - 711
Target Start/End: Complemental strand, 28231320 - 28231021
Alignment:
| Q |
411 |
tatatatcactcttaaattccattctcttatcattgtaatgaagcatattgggtcacaaaactagtgactgaaccatatcaacacatgctaggcactaca |
510 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28231320 |
tatatattactcttaaattccattctcttatcattgtaatgaagcatattgggtcacaaaactagtgactgaaccatatcaacacatgctaggcactaca |
28231221 |
T |
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| Q |
511 |
attgaaataatgtactttttggctaaaagttgaaacatcatgatatatggagttgaacttgaagtttcacattcaataaatttcttgtttagtgccctaa |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28231220 |
attgaaataatgtactttttggctaaaagttgaaacatcatgatatatggagttgaacttgaagtttcacattcaataaatttcttgtttagtgacctaa |
28231121 |
T |
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| Q |
611 |
ctagtggttcctatagtttgcttcattaaaaatttgaaacaaaattaccacaaatttatggttgaagtaggggcatattctatcatcattaatgttgctt |
710 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28231120 |
ctagtggttcctatagtttgcttcattaaaaatttgaaacaaaattaccacaaatttatggttgaagta-gggcatattctatcatcattaatgttgctt |
28231022 |
T |
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