View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_low_40 (Length: 264)
Name: NF5892_low_40
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 45646586 - 45646841
Alignment:
| Q |
1 |
ttttacgagggagatttctataatgtactaaatattacttcaaaaataaattcaaaattttgaaagatactgataagttgacttaaaacaaaactttaga |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45646586 |
ttttgcgagggagatttctataatgtactaaatattacttcaaaaataaattcaaaattttgaaagataatgataagttgacttaaaacaaaactttaga |
45646685 |
T |
|
| Q |
101 |
gggactaaaaacaacttgatatctttataaagatcagaaatttatttaacccttaaaactattttattttagttaaatctcgtgtaagcttgcagtttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45646686 |
gggactaaaaacaacttgatatctttataaagatcagaaacttatttaacccttaaaactattttattttagttaaatctcgtgtaagcttgcagtttaa |
45646785 |
T |
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| Q |
201 |
aatggtcaaactaaatcaatacatacatttttaagaattaattcaattagtataat |
256 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45646786 |
aatggtcaaacaaaatcaatgcatacatttttaagaattaattcaattagtataat |
45646841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 17259825 - 17259884
Alignment:
| Q |
11 |
gagatttctataatgtactaaatattacttcaaaaataaattcaaaattttgaaagatac |
70 |
Q |
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| T |
17259825 |
gagatttctataatgtactaaacaaaactacaaaaaacaatttaaaattttgaaagatac |
17259884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 33472587 - 33472644
Alignment:
| Q |
12 |
agatttctataatgtactaaatattacttcaaaaataaattcaaaattttgaaagata |
69 |
Q |
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| T |
33472587 |
agatttctataacgtaataaacatgactgcaaaaattaattcaaaattttgaaggata |
33472644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 14538191 - 14538267
Alignment:
| Q |
11 |
gagatttctataatgtactaaatattacttcaaaaataaattcaaaattttgaaagatactgataagttgacttaaa |
87 |
Q |
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||||||| ||||||||||||| || ||| ||||| ||||||||||||||||||| ||| |||||| ||||||| |
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| T |
14538191 |
gagattttcataatgtactaaacatgactggaaaaaaaaattcaaaattttgaaagctacacgtaagtttacttaaa |
14538267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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