View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_low_42 (Length: 257)
Name: NF5892_low_42
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 8 - 243
Target Start/End: Original strand, 54890658 - 54890893
Alignment:
| Q |
8 |
gaaatgaattgactaaaagaaagaagaaaaaatggaaacgaaccattatacttgcacatgagaagaaacttctccaacagtttgagacaagtttgatcgt |
107 |
Q |
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| T |
54890658 |
gaaatgaattgactgaaagaaagaagaaaaaatggaaacgaaccattatacttgcacataagaagaaacttctccaacagtttgagacaagtttgatcgt |
54890757 |
T |
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| Q |
108 |
catcaacagccagaacacgcatacccaccggaaaatcttctcctaagacattttcaacctccaaaggattctccacagccatcgtgaaccagaatcaaat |
207 |
Q |
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| T |
54890758 |
catcaacagccagaacacgcatacccaccggaaaatcttctctgaagacattttcaacctccaaaggattctccacagccatcgtgaaccagaatcaaat |
54890857 |
T |
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| Q |
208 |
atccaaaacagaaaacaagtattgatcggtgatcag |
243 |
Q |
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| T |
54890858 |
atccaaaacagaaaacaagtattgatcagtgatcag |
54890893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 229
Target Start/End: Original strand, 54896007 - 54896193
Alignment:
| Q |
44 |
aacgaaccattatacttgcacatgagaagaaacttctccaacagtttgagacaagtttgatcgtcatcaacagccagaacacgcatacccaccggaaaat |
143 |
Q |
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| T |
54896007 |
aacgaaccattatacttgcatgtgagaagatgcttctccagcactttgagactagtctgatcatcatcaacagccagaacacgcataccaactggaaaac |
54896106 |
T |
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| Q |
144 |
cttctcctaagacattttcaacctccaaaggattctccacagccatcgtgaaccag-aatcaaatatccaaaacagaaaacaagtat |
229 |
Q |
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| T |
54896107 |
cttcttctgtaacatcttcacccaccaaacgatcctccacagccatcataaaccagaaaacaaataaacaaaacagaaaacaagtat |
54896193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 159
Target Start/End: Original strand, 54907265 - 54907380
Alignment:
| Q |
44 |
aacgaaccattatacttgcacatgagaagaaacttctccaacagtttgagacaagtttgatcgtcatcaacagccagaacacgcatacccaccggaaaat |
143 |
Q |
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| T |
54907265 |
aacgaaccattatagttgcatgtgagaagttgcttctccagcactttgagataagttggatcgtcatcaactgccagaacacgcatacccgccggaaaac |
54907364 |
T |
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| Q |
144 |
cttctcctaagacatt |
159 |
Q |
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| T |
54907365 |
cttctcctaaaacatt |
54907380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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