View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_low_46 (Length: 255)
Name: NF5892_low_46
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 43580210 - 43580449
Alignment:
| Q |
1 |
tataaatatcaaagtcatctgtctattctggctctatatcatatgctagacttgttcgtattgtgaatatgtttagctttaaaagaggttatctttcttt |
100 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43580210 |
tataaattgcaaagtcaactgtctattctggctctatatcatatgctagacttgttcgtattgtgaatatgtttagctttaaaagaggttatctttcttt |
43580309 |
T |
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| Q |
101 |
tatatacttgggggttcccatttttaaagggaaacctaaagctttgtattttcaacccatagctgacaagattaaatctaaactttttgcctggaaaaca |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43580310 |
tatatacttgggggttcccattttcaaagggaaacctaaagctttgtattttctacccatagctgacaagattaaatctaaactttttgcctggaaaaca |
43580409 |
T |
|
| Q |
201 |
accctctatggctggaaggttacaacttattaaatctgtg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
43580410 |
accctctatggctggaaggttacaacttattaaatctgtg |
43580449 |
T |
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