View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5892_low_5 (Length: 729)

Name: NF5892_low_5
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5892_low_5
NF5892_low_5
[»] chr1 (5 HSPs)
chr1 (11-704)||(31285250-31285955)
chr1 (12-129)||(10917425-10917543)
chr1 (540-698)||(40894688-40894847)
chr1 (659-700)||(38504331-38504372)
chr1 (651-693)||(39677532-39677574)
[»] chr3 (2 HSPs)
chr3 (29-84)||(31362353-31362409)
chr3 (12-81)||(40574407-40574477)
[»] chr2 (3 HSPs)
chr2 (58-159)||(8367107-8367213)
chr2 (12-76)||(14218979-14219044)
chr2 (12-124)||(17862352-17862467)
[»] chr7 (2 HSPs)
chr7 (14-75)||(30108282-30108344)
chr7 (551-624)||(40242860-40242933)
[»] chr4 (3 HSPs)
chr4 (587-641)||(19297001-19297055)
chr4 (656-702)||(20727132-20727178)
chr4 (99-159)||(46324386-46324447)
[»] chr8 (2 HSPs)
chr8 (561-638)||(16530214-16530291)
chr8 (597-642)||(33004646-33004691)


Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 11 - 704
Target Start/End: Complemental strand, 31285955 - 31285250
Alignment:
Q  11 cagagaaaagaagaagtgatttagtattatttttgacataattttgctcacaagaatgtgattttttgtctcttttcctacctcaaaagtgtctatctat 110  Q
    ||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||    
T  31285955 cagagaaaagaagaaataatttagtattattttttacataattttgctcacaagaatgtgactttttgtctcttttcctacctcaa--gtgtctatctat 31285858  T
Q  111 agagaaatttatgtcctttgttaagggaaacatctctttagaagagtttatccatgaataacaatggttacattgcttcaataatcaaacataacaccat 210  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31285857 agagaaatttatgtcctttgataagggaaacacctctttagaagagtttatccatgaataacaatggttacattgcttcaataatcaaacattacaccat 31285758  T
Q  211 ttcgctgaaatatctctatttaaacttctctatttgcattgcttcaccatttccctgaaatatctctatttaaagttctctatttgcattgcttcaaaga 310  Q
    ||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  31285757 ttttctgaaatatctctatttaaagttctctatttgcattgcttcaccatttccctgaaatat--------aaagttctctatttgcattgcttcaaaga 31285666  T
Q  311 tctctatataaacattgcaagtttagattatatt----ttggaaattcatctaatannnnnnnnn--catgaatcttatcatggttaaatgtgtagggaa 404  Q
    ||||||||||||||||||||||||||||||||||    |||||||||||||| |||           |||||||||||||||||||||||||||||||||    
T  31285665 tctctatataaacattgcaagtttagattatattaattttggaaattcatctcatatatttttttttcatgaatcttatcatggttaaatgtgtagggaa 31285566  T
Q  405 gggaagtcatggaatggatcaaggtcatgttaccggttactcacttgagcgtaaacctacttgccaaataagaccaatcatgagagattgtgccttttt- 503  Q
    |     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31285565 g-----tcatggaatggatcaaggtcatgttaccggttactcacttgagcgtaaacctacttgccaaataagaccaatcatgagagattgtgcctttttg 31285471  T
Q  504 ------------gctgaaaaattt--------gttttcgannnnnnnnnaccctagtaatcgcgttcaaaaatgtgattaaatcagttaagtagatgatt 583  Q
                ||||||||||||        ||||||||         |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31285470 ctattcctttgagctgaaaaatttaaaaatttgttttcgatttttttttaccctagtaatcgcattcaaaaatgtgattaaatcagttaagtagatgatt 31285371  T
Q  584 gaatcaattcacagtcataattatggttaattcaactacataattaatcacaatttcattaatttcaaagtgaaccatatactcaactgaattaaccata 683  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31285370 gaatcaattcacagtcataattatggttaattcaactacataattaaccacaatttcattaatttcaaagtgaaccatatactcaactgaattaaccata 31285271  T
Q  684 attatgcatgtgattaacctg 704  Q
    |||||||||||||||||||||    
T  31285270 attatgcatgtgattaacctg 31285250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 10917543 - 10917425
Alignment:
Q  12 agagaaaagaagaagtgatttagtattatttttgacataattttg-ctcacaagaatgtgattttttgtctcttttcctacctcaaaagtgtctatctat 110  Q
    |||||||||||||| |||||| |||||||||| | || || |||| || |||||||||||||||| ||| |||||| || |||| ||||||||||| |||    
T  10917543 agagaaaagaagaaatgattttgtattattttcggcagaactttgacttacaagaatgtgattttgtgtatctttttctgcctccaaagtgtctatttat 10917444  T
Q  111 agagaaatttatgtccttt 129  Q
    ||||||| |||||||||||    
T  10917443 agagaaacttatgtccttt 10917425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 698
Target Start/End: Complemental strand, 40894847 - 40894688
Alignment:
Q  540 taatcgcgttcaaaaatgtgattaaatcagttaagtagatgattgaatcaattcacagtcataattatggttaattcaactacataattaatcacaattt 639  Q
    ||||| |||| ||||||||| |||  |||||| |||||||| || | | |||||||||||| |||||||||||||||||||||||| |||| | |||| |    
T  40894847 taatcacgttaaaaaatgtggttatttcagttgagtagatggttaatttaattcacagtca-aattatggttaattcaactacatagttaaccgcaatct 40894749  T
Q  640 cattaatttcaaagtg--aaccatatactcaactgaattaaccataattatgcatgtgatt 698  Q
    ||  | |||| |||||  | |||||| || ||  |||||||||| |||||| |||||||||    
T  40894748 cacaattttctaagtgatagccatattcttaagggaattaaccacaattatacatgtgatt 40894688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 659 - 700
Target Start/End: Original strand, 38504331 - 38504372
Alignment:
Q  659 catatactcaactgaattaaccataattatgcatgtgattaa 700  Q
    |||||| ||||||||||||||||||||| |||||||||||||    
T  38504331 catatattcaactgaattaaccataattttgcatgtgattaa 38504372  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 651 - 693
Target Start/End: Original strand, 39677532 - 39677574
Alignment:
Q  651 aagtgaaccatatactcaactgaattaaccataattatgcatg 693  Q
    |||| |||||||||||||||||| ||||||| |||||||||||    
T  39677532 aagttaaccatatactcaactgagttaaccacaattatgcatg 39677574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 31362353 - 31362409
Alignment:
Q  29 atttagtattatttttgacataattttg-ctcacaagaatgtgattttttgtctctt 84  Q
    ||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||    
T  31362353 atttagtattattttcgacagaattttgactcacaagaatgtgattttttgtctctt 31362409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 40574407 - 40574477
Alignment:
Q  12 agagaaaagaagaagtgatttagtattatttttgacataattttg-ctcacaagaatgtgattttttgtct 81  Q
    |||||||||||  | ||||||| ||||||||| | || ||||||| ||||||||||||||||||| |||||    
T  40574407 agagaaaagaaagaatgatttaatattattttcggcagaattttgactcacaagaatgtgattttgtgtct 40574477  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 58 - 159
Target Start/End: Complemental strand, 8367213 - 8367107
Alignment:
Q  58 tcacaagaatgtgattttttgtctcttttcctacctcaaaagtgtc--tatcta-tagagaaatttatgtccttt--gttaagggaaacatctctttaga 152  Q
    ||||||||||||||||||||||||| ||| || ||| |||||||||  ||| || || | |||||||||||||||  || ||| ||||||||||||||||    
T  8367213 tcacaagaatgtgattttttgtctcattttctgccttaaaagtgtctttatttattataaaaatttatgtccttttggtaaagagaaacatctctttaga 8367114  T
Q  153 agagttt 159  Q
    |||||||    
T  8367113 agagttt 8367107  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 14218979 - 14219044
Alignment:
Q  12 agagaaaagaagaagtgatttagtattatttttgacataattttg-ctcacaagaatgtgattttt 76  Q
    |||||||||||  | ||||||||||||||||||  |||||||||| ||||||| ||||||||||||    
T  14218979 agagaaaagaaagaatgatttagtattatttttagcataattttgactcacaataatgtgattttt 14219044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 17862467 - 17862352
Alignment:
Q  12 agagaaaagaagaagtgatttagtattatttttgacataattttg-ctcacaagaatgtgattttttgtctcttttcctacctcaaaag--tgtctatct 108  Q
    ||||||| |||||| | ||||| |||||||||||||| |||||||  ||||||||||| |||||| | ||| ||||| | |||| ||||  | ||||  |    
T  17862467 agagaaatgaagaaatcatttaatattatttttgacaaaattttgagtcacaagaatgagattttgtatctattttcttgcctccaaagtttctctactt 17862368  T
Q  109 atagagaaatttatgt 124  Q
    ||||||||||||||||    
T  17862367 atagagaaatttatgt 17862352  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 30108282 - 30108344
Alignment:
Q  14 agaaaagaagaagtgatttagtattatttttgacataattttg-ctcacaagaatgtgatttt 75  Q
    |||||||||||| ||||||||||||||||| | |||||| ||| |||||||||||||||||||    
T  30108282 agaaaagaagaaatgatttagtattattttcggcataatgttgactcacaagaatgtgatttt 30108344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 624
Target Start/End: Original strand, 40242860 - 40242933
Alignment:
Q  551 aaaaatgtgattaaatcagttaagtagatgattgaatcaattcacagtcataattatggttaattcaactacat 624  Q
    |||||| ||||||| | |||| |||| ||| || | |||||||||| ||| |||| ||||||||||||||||||    
T  40242860 aaaaatatgattaatttagtttagtaaatggttaattcaattcacaatcaaaattgtggttaattcaactacat 40242933  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 587 - 641
Target Start/End: Complemental strand, 19297055 - 19297001
Alignment:
Q  587 tcaattcacagtcataattatggttaattcaactacataattaatcacaatttca 641  Q
    ||||||||| |||| |||| |||||||||||||||||| ||||| ||||||||||    
T  19297055 tcaattcacggtcaaaattctggttaattcaactacatgattaaccacaatttca 19297001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 656 - 702
Target Start/End: Complemental strand, 20727178 - 20727132
Alignment:
Q  656 aaccatatactcaactgaattaaccataattatgcatgtgattaacc 702  Q
    |||||||||||||| ||||||||||| |||| |||||||||||||||    
T  20727178 aaccatatactcaagtgaattaaccacaattttgcatgtgattaacc 20727132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 46324447 - 46324386
Alignment:
Q  99 gtgtctatctatagagaaatttatgtcct-ttgttaagggaaacatctctttagaagagttt 159  Q
    |||||||| |||||| ||| ||||||||| |||| ||| |||||| ||||||||||||||||    
T  46324447 gtgtctatatatagaaaaacttatgtcctcttgtgaagagaaacaactctttagaagagttt 46324386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 561 - 638
Target Start/End: Complemental strand, 16530291 - 16530214
Alignment:
Q  561 ttaaatcagttaagtagatgattgaatcaattcacagtcataattatggttaattcaactacataattaatcacaatt 638  Q
    |||| |||||| ||| |||||||  ||||||||||||||| |||| ||||| |||||| ||||| ||||| |||||||    
T  16530291 ttaattcagttgagtggatgattatatcaattcacagtcaaaattgtggttgattcaagtacatgattaaccacaatt 16530214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 642
Target Start/End: Complemental strand, 33004691 - 33004646
Alignment:
Q  597 gtcataattatggttaattcaactacataattaatcacaatttcat 642  Q
    |||| |||| ||||||||||||| |||||||||| |||||||||||    
T  33004691 gtcaaaattgtggttaattcaacgacataattaaccacaatttcat 33004646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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