View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_low_53 (Length: 248)
Name: NF5892_low_53
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_low_53 |
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| [»] scaffold0349 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 27678052 - 27678262
Alignment:
| Q |
18 |
gtaggaaaagggaaggaagcttcccagttcccatttggtaaaagtgtagaaccaaaaaacagtgaaaaatagctgccaagtttgattttgccttcaactc |
117 |
Q |
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| T |
27678052 |
gtaggaaaagggaaggaagcttcccagttcccatttggtaaaagtgtagaaccaaaaaacagtgaaaaatagctgccaagtttgattttgtcttcaactc |
27678151 |
T |
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| Q |
118 |
aatcattatttttccaacatttataattgttagtacaatgtaagattaacatgaaaaataggacattgttatattagttctgttggatagctaattaaac |
217 |
Q |
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| T |
27678152 |
aatcattatttttccaacatttataattgttagtacaatgtaagattaacatgaaaaataggacattgttatattagttctgttggatagctaattaaac |
27678251 |
T |
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| Q |
218 |
atttaacgtaa |
228 |
Q |
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| T |
27678252 |
atttaacgtaa |
27678262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 27594032 - 27593808
Alignment:
| Q |
20 |
aggaaaagggaaggaagcttcccagttcccatttggtaaaagtgtagaaccaaaaaacagtgaaaaatagctgccaagtttgattt-------------- |
105 |
Q |
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| T |
27594032 |
aggaaaagggaaggaagcttcccagttcccatttggtaaaagtgtagaaccaaaaaacagtgaaaaatagcttccaagtttgatttctatccattctgat |
27593933 |
T |
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| Q |
106 |
--tgccttcaactcaatcattatttttccaacatttataattgttagtacaatgtaagattaacatgaaaaataggacattgttatattagttctgttgg |
203 |
Q |
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| T |
27593932 |
tttgccgtcaactcagtcattatttttccaacatttataactgttagtacaatgtaagattaacatgaaaaataggacattgttatattagttctgttgg |
27593833 |
T |
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| Q |
204 |
atagctaattaaacatttaacgtaa |
228 |
Q |
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| T |
27593832 |
atagctaattaaacatttaacgtaa |
27593808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 226
Target Start/End: Complemental strand, 27725704 - 27725598
Alignment:
| Q |
114 |
actcaatcattatttttccaacatttataattgttagtacaatgtaagattaacatgaaaaataggacattgttatattagttctgttggatagctaatt |
213 |
Q |
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| T |
27725704 |
actcaatctttatttttcggatatttataattgttagtacaaagtaaaataaacatgaataa------ataattatgttagttctgttgtatagctaatt |
27725611 |
T |
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| Q |
214 |
aaacatttaacgt |
226 |
Q |
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| T |
27725610 |
atccatttaacgt |
27725598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 27585438 - 27585402
Alignment:
| Q |
111 |
tcaactcaatcattatttttccaacatttataattgt |
147 |
Q |
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| T |
27585438 |
tcaactcaatctttctttttccaacatttataattgt |
27585402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 226
Target Start/End: Complemental strand, 4280 - 4174
Alignment:
| Q |
114 |
actcaatcattatttttccaacatttataattgttagtacaatgtaagattaacatgaaaaataggacattgttatattagttctgttggatagctaatt |
213 |
Q |
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|||||||| ||||||||| | |||||||||||||||||||| |||| || |||||||| || || |||| |||||||||||| |||||||||| |
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| T |
4280 |
actcaatctttatttttcggatatttataattgttagtacaaagtaaaataaacatgaataa------ataattatgttagttctgttgtatagctaatt |
4187 |
T |
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| Q |
214 |
aaacatttaacgt |
226 |
Q |
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| T |
4186 |
atccatttaacgt |
4174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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