View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5892_low_56 (Length: 245)

Name: NF5892_low_56
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5892_low_56
NF5892_low_56
[»] chr5 (2 HSPs)
chr5 (4-228)||(28532678-28532896)
chr5 (40-85)||(41900503-41900548)
[»] chr4 (4 HSPs)
chr4 (28-87)||(553759-553818)
chr4 (32-87)||(21833278-21833333)
chr4 (109-146)||(7225253-7225290)
chr4 (107-147)||(53760907-53760947)
[»] chr6 (9 HSPs)
chr6 (29-87)||(6593929-6593987)
chr6 (29-85)||(6423907-6423963)
chr6 (30-83)||(6410699-6410752)
chr6 (29-83)||(19633104-19633158)
chr6 (30-87)||(6417092-6417149)
chr6 (37-86)||(6596241-6596290)
chr6 (28-69)||(7132323-7132364)
chr6 (28-69)||(7135246-7135287)
chr6 (28-69)||(7138169-7138210)
[»] chr3 (3 HSPs)
chr3 (29-87)||(51763388-51763446)
chr3 (29-86)||(51113195-51113252)
chr3 (115-147)||(51763498-51763530)
[»] chr7 (5 HSPs)
chr7 (28-87)||(10615713-10615772)
chr7 (28-88)||(10169047-10169107)
chr7 (103-147)||(10169137-10169181)
chr7 (28-88)||(10176572-10176632)
chr7 (103-147)||(10176662-10176706)
[»] chr8 (3 HSPs)
chr8 (42-86)||(32151969-32152013)
chr8 (118-146)||(18314740-18314768)
chr8 (30-78)||(34935986-34936034)
[»] chr1 (2 HSPs)
chr1 (23-87)||(7555198-7555262)
chr1 (28-85)||(19467428-19467485)


Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 4 - 228
Target Start/End: Complemental strand, 28532896 - 28532678
Alignment:
Q  4 ccaaacgttggtaaccgcttcccagcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttccggctttgttaacctat 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532896 ccaaacgttggtaaccgcttcccagcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttccggctttgttaacctat 28532797  T
Q  104 ttcttatcgcagaatgtttccctttgctcgaagaactcgacctcgacctcatacttaaataccccttaaattatatctctatgatagagactcggactcg 203  Q
    |||||||||||||||||||||||||||||||      |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||    
T  28532796 ttcttatcgcagaatgtttccctttgctcga------cgacctcgacctcagactaaaataccccttaaattatatctctatgatagagactcgaactcg 28532703  T
Q  204 tagttataacaatgggatagaggct 228  Q
    |||||||||||||||| ||||||||    
T  28532702 tagttataacaatggggtagaggct 28532678  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 41900503 - 41900548
Alignment:
Q  40 cgagctttttcacaaaacattacaactttgacctctttcacttgtt 85  Q
    |||||||||||  |||| |||||||||||||||||| |||||||||    
T  41900503 cgagctttttccaaaaagattacaactttgacctctctcacttgtt 41900548  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 553818 - 553759
Alignment:
Q  28 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 87  Q
    |||||||| ||||||||||| || |||||||||||||||||||||||| |||| ||||||    
T  553818 gcaaatgggttgcgagctttctcccaaaacattacaactttgacctctctcacctgttcc 553759  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 21833278 - 21833333
Alignment:
Q  32 atggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 87  Q
    |||| ||||||| |||| ||||||||||||| |||||||||||| |||||||||||    
T  21833278 atgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgttcc 21833333  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 7225253 - 7225290
Alignment:
Q  109 atcgcagaatgtttccctttgctcgaagaactcgacct 146  Q
    ||||| || |||||||||||||||||||||||||||||    
T  7225253 atcgcggattgtttccctttgctcgaagaactcgacct 7225290  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 53760907 - 53760947
Alignment:
Q  107 ttatcgcagaatgtttccctttgctcgaagaactcgacctc 147  Q
    ||||||| ||||||||||||||||  |||||||||||||||    
T  53760907 ttatcgcggaatgtttccctttgcgggaagaactcgacctc 53760947  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 6593929 - 6593987
Alignment:
Q  29 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 87  Q
    ||||||| ||||||| ||| |||||||| |||||||||||||||||||||| |||||||    
T  6593929 caaatggtttgcgagttttctcacaaaagattacaactttgacctctttcaattgttcc 6593987  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 6423963 - 6423907
Alignment:
Q  29 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgtt 85  Q
    ||||||| ||||||||||| || |||||||| ||||||||||||||| |||||||||    
T  6423963 caaatgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgtt 6423907  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 6410752 - 6410699
Alignment:
Q  30 aaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttg 83  Q
    |||||| |||| || ||| || ||||||||||||||||||||||||||||||||    
T  6410752 aaatgggttgcaagttttctcccaaaacattacaactttgacctctttcacttg 6410699  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 19633158 - 19633104
Alignment:
Q  29 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttg 83  Q
    ||||||| ||||||||||| ||  ||| ||||||||||||||||||| |||||||    
T  19633158 caaatgggttgcgagctttctccgaaagcattacaactttgacctctctcacttg 19633104  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 6417149 - 6417092
Alignment:
Q  30 aaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 87  Q
    |||||| || |||||||| || ||||| | |||||||||||||||| |||||||||||    
T  6417149 aaatgggttacgagctttctcccaaaagaatacaactttgacctctctcacttgttcc 6417092  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 6596241 - 6596290
Alignment:
Q  37 ttgcgagctttttcacaaaacattacaactttgacctctttcacttgttc 86  Q
    ||||||| ||| || |||||||| ||||||||||||||| ||||||||||    
T  6596241 ttgcgagttttctcccaaaacataacaactttgacctctctcacttgttc 6596290  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 7132364 - 7132323
Alignment:
Q  28 gcaaatggattgcgagctttttcacaaaacattacaactttg 69  Q
    |||||||| ||||||||||| || ||||||||||||||||||    
T  7132364 gcaaatgggttgcgagctttctcccaaaacattacaactttg 7132323  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 7135287 - 7135246
Alignment:
Q  28 gcaaatggattgcgagctttttcacaaaacattacaactttg 69  Q
    |||||||| ||||||||||| || ||||||||||||||||||    
T  7135287 gcaaatgggttgcgagctttctcccaaaacattacaactttg 7135246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 7138210 - 7138169
Alignment:
Q  28 gcaaatggattgcgagctttttcacaaaacattacaactttg 69  Q
    |||||||| ||||||||||| || ||||||||||||||||||    
T  7138210 gcaaatgggttgcgagctttctcccaaaacattacaactttg 7138169  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 51763388 - 51763446
Alignment:
Q  29 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 87  Q
    ||||||| ||||||| |||||||||||| |||||||||||||| ||| |||||||||||    
T  51763388 caaatgggttgcgagttttttcacaaaagattacaactttgacatctctcacttgttcc 51763446  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 51113195 - 51113252
Alignment:
Q  29 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttc 86  Q
    ||||||||||||||||||| ||  |||| ||||||||| |||||||| ||||||||||    
T  51113195 caaatggattgcgagctttctcggaaaatattacaactctgacctctctcacttgttc 51113252  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 51763498 - 51763530
Alignment:
Q  115 gaatgtttccctttgctcgaagaactcgacctc 147  Q
    ||||||||||| |||||||||||||||||||||    
T  51763498 gaatgtttcccattgctcgaagaactcgacctc 51763530  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 10615772 - 10615713
Alignment:
Q  28 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 87  Q
    |||||||| || |||||||| || ||||| |||||||||||||||||| |||||||||||    
T  10615772 gcaaatgggttacgagctttctcccaaaagattacaactttgacctctctcacttgttcc 10615713  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 10169047 - 10169107
Alignment:
Q  28 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttccg 88  Q
    |||||||| ||||||| ||| || ||||| |||| ||||||||||||| ||||||||||||    
T  10169047 gcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttccg 10169107  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 10169137 - 10169181
Alignment:
Q  103 tttcttatcgcagaatgtttccctttgctcgaagaactcgacctc 147  Q
    |||||||||||||||||||| |||||||| ||||||||| |||||    
T  10169137 tttcttatcgcagaatgttttcctttgcttgaagaactcaacctc 10169181  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 10176572 - 10176632
Alignment:
Q  28 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttccg 88  Q
    |||||||| ||||||| ||| || ||||| |||| ||||||||||||| ||||||||||||    
T  10176572 gcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttccg 10176632  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 10176662 - 10176706
Alignment:
Q  103 tttcttatcgcagaatgtttccctttgctcgaagaactcgacctc 147  Q
    |||||||||||||||||||| |||||||| ||||||||| |||||    
T  10176662 tttcttatcgcagaatgttttcctttgcttgaagaactcaacctc 10176706  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 32152013 - 32151969
Alignment:
Q  42 agctttttcacaaaacattacaactttgacctctttcacttgttc 86  Q
    |||||| || |||||||||||||||||||||||| ||||||||||    
T  32152013 agctttctcccaaaacattacaactttgacctctctcacttgttc 32151969  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 146
Target Start/End: Original strand, 18314740 - 18314768
Alignment:
Q  118 tgtttccctttgctcgaagaactcgacct 146  Q
    |||||||||||||||||||||||||||||    
T  18314740 tgtttccctttgctcgaagaactcgacct 18314768  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 34935986 - 34936034
Alignment:
Q  30 aaatggattgcgagctttttcacaaaacattacaactttgacctctttc 78  Q
    |||||| ||||||| ||| |||||||| |||||||||||||| ||||||    
T  34935986 aaatggtttgcgagttttctcacaaaatattacaactttgacatctttc 34936034  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 7555262 - 7555198
Alignment:
Q  23 tcccagcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 87  Q
    |||| |||| ||||||||||||||| || ||||| ||||||||||| |||||  |||||||||||    
T  7555262 tccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttcc 7555198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 19467428 - 19467485
Alignment:
Q  28 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgtt 85  Q
    |||||||| ||||||| |||  | ||||| |||||||||||||||||| |||||||||    
T  19467428 gcaaatgggttgcgagttttcactcaaaatattacaactttgacctctctcacttgtt 19467485  T

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