View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_low_6 (Length: 682)
Name: NF5892_low_6
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 362
Target Start/End: Complemental strand, 40615020 - 40614659
Alignment:
| Q |
11 |
tcatcagcaatagaatgaagaatcttatcgtattcaagaatcaagaccaagattctgaacaatagtaggaagacattgagcatcgggacgagagataaca |
110 |
Q |
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| T |
40615020 |
tcattagcaatagaatgaagaatcttatcatattcaagaatcaagaccaagattctgaacaatagtaggaagacattgaacatcgggacgagagataaca |
40614921 |
T |
|
| Q |
111 |
cggagagtgagattcaccgggtcatgatcatcggtagcgaagatggctgagagagtgtgag----------gacatccaagatgtagggcttttgaaccc |
200 |
Q |
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| T |
40614920 |
cggagagtgagattcaccggctcatgatcatcggtagcgaagatggctgagagagtgtgagtacgagcgcggacatccaagatgtagggcttttgaaccc |
40614821 |
T |
|
| Q |
201 |
atgggatcaggaaatgagttccttcaccaacagattctggaagagtgtcgtggaattggtcgacaaggacagaggagtacacagtagttgcagcggcgcc |
300 |
Q |
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| T |
40614820 |
atgggatcaggaaatgagttccttcaccaacagattctggaagagtgccgtggaattggtcgacaaggacagaggagtacacagtagttgcagcggcgcc |
40614721 |
T |
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| Q |
301 |
gagacccaaagccaagcgtgctttcttggagaggatggatgctattgctttgctgcttatca |
362 |
Q |
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| T |
40614720 |
gagacccaaagccaagcgagctttcttggagacgatggatgctattgctttgctgcttatca |
40614659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 438 - 666
Target Start/End: Complemental strand, 40614583 - 40614354
Alignment:
| Q |
438 |
aataaataaatgtggcgaaacacctgtgacttgtcgaaggggaaaattatagagttgagnnnnnnntaaatgtggccaaaagggtgtgtgccttgtagaa |
537 |
Q |
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| T |
40614583 |
aataaataaatgtggcgaaacacctgtgacttgtcgaaggggaaaattatagagttgagaaaaaaataaatgtggccaaaagggtgtg--ccttgtagaa |
40614486 |
T |
|
| Q |
538 |
gaggaaaattataaaacctgctactaaaacaagaaattaccctcaaacccaaccgaaatagggataataaatctaatttaa---tacaagcaaatcaaat |
634 |
Q |
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| T |
40614485 |
gaggaaaattataaaacctgctactaaaacaagaaattaccctcaaacccaaccgaaatagggataataaatctaatttaatagtacaagcaaatcaaat |
40614386 |
T |
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| Q |
635 |
accatcaaacctaagtaccccaagaaagcaac |
666 |
Q |
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| T |
40614385 |
accatcaaacctaagtaccccaagaaagcaac |
40614354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 438 - 667
Target Start/End: Complemental strand, 40610622 - 40610398
Alignment:
| Q |
438 |
aataaataaatgtggcgaaacacctgtgacttgtcgaaggggaaaattatagagttgagnnnnnnntaaatgtggccaaaagggtgtgtgccttgtagaa |
537 |
Q |
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| T |
40610622 |
aataaataaatgtcgcgaaacacatgtgacttgtcgaaggggaaaattagagagttgagaaaaaaataaacgtggccaaaagg--gtgtgccttgtagaa |
40610525 |
T |
|
| Q |
538 |
gaggaaaattataaaacctgctactaaaacaagaaattaccctcaaacccaaccgaaatagggataataaatctaatttaatacaagcaaatcaaatac- |
636 |
Q |
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| T |
40610524 |
ggggaaaattatacaacctgccactaaaataa-aaattaccctcaaacccaaccgaaacagggataataaatc-----taatacaagaaaatcaaatacc |
40610431 |
T |
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| Q |
637 |
--catcaaacctaagtaccccaagaaagcaact |
667 |
Q |
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| T |
40610430 |
atcatcaaacctaagtaccccaagaaagcaact |
40610398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 51 - 270
Target Start/End: Complemental strand, 40611046 - 40610817
Alignment:
| Q |
51 |
tcaagaccaagattctgaacaatagtaggaagacattgagcatcgggacgagagataacacggagagtgagattcaccgggtcatgatcatcggtagcga |
150 |
Q |
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|||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40611046 |
tcaagaccaagattctgaacaatagtaggaagacgttgaacctcgggacgagagataacacggagagtgagattcaccggctcatgatcatcggtagcgg |
40610947 |
T |
|
| Q |
151 |
agatggctgagagagtgtga----------ggacatccaagatgtagggcttttgaacccatgggatcaggaaatgagttccttcaccaacagattctgg |
240 |
Q |
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| T |
40610946 |
agatggctgagagcctgtgagtacgagggcggaggtcgaagatgtagggcttttgaacccatgggatcttgaaatgaattcctttgccgacggatctggg |
40610847 |
T |
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| Q |
241 |
aagagtgtcgtggaattggtcgacaaggac |
270 |
Q |
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| T |
40610846 |
aagagtgccgtggaatcggtcgacgaggac |
40610817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 359
Target Start/End: Complemental strand, 40610743 - 40610698
Alignment:
| Q |
314 |
aagcgtgctttcttggagaggatggatgctattgctttgctgctta |
359 |
Q |
| |
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||||||||||||||| ||||| |||||||| |||||| |||||||| |
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| T |
40610743 |
aagcgtgctttcttgaagaggttggatgcttttgcttggctgctta |
40610698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 51 - 237
Target Start/End: Original strand, 1385032 - 1385228
Alignment:
| Q |
51 |
tcaagaccaagattctgaacaatagtaggaagacattgagcatcgggacgagagataacacggagagtgagattcaccgggtcatgatcatcggtagcga |
150 |
Q |
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|||||||| ||||||||||||||||||||||||| || || ||| |||||||||| |||||| ||||||||||||||| | | |||| | |||| || |
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| T |
1385032 |
tcaagaccgagattctgaacaatagtaggaagacgttcagtatcaggacgagagagaacacgaagagtgagattcaccatctgaagatctttggtaccgg |
1385131 |
T |
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| Q |
151 |
agatggctgagagagtgtga----------ggacatccaagatgtagggcttttgaacccatgggatcaggaaatgagttccttcaccaacagattc |
237 |
Q |
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| T |
1385132 |
agatggatgagaatgtgtgaggtcgagtgcggatatcgaagacgtaaggcttttgaacccatgggatgaggaaatgagttccttcaccgactgattc |
1385228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 231814 - 231737
Alignment:
| Q |
51 |
tcaagaccaagattctgaacaatagtaggaagacattgagcatcgggacgagagataacacggagagtgagattcacc |
128 |
Q |
| |
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|||||||||| |||| |||||||||||||||||||||||| ||| |||||||||| |||||| ||||| | ||||||| |
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| T |
231814 |
tcaagaccaaaattccgaacaatagtaggaagacattgagtatcaggacgagagagaacacgaagagtaaaattcacc |
231737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 18133313 - 18133264
Alignment:
| Q |
179 |
aagatgtagggcttttgaacccatgggatcaggaaatgagttccttcacc |
228 |
Q |
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|||||||| |||||||||||||||||||| |||||||| ||||||||||| |
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| T |
18133313 |
aagatgtaaggcttttgaacccatgggatgaggaaatgggttccttcacc |
18133264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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