View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_low_60 (Length: 241)
Name: NF5892_low_60
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_low_60 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 21 - 225
Target Start/End: Original strand, 30720233 - 30720438
Alignment:
| Q |
21 |
atttttcctactgttttgttgatggattccacttctaaaaccaaacactacaaaattccattgtttaagatagttgggggtcacctcaacgcaattggca |
120 |
Q |
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| T |
30720233 |
atttttcctactattttgttgatggattccacttataaaaccaaacactacaaaatttcattgtttaagatagctgggg-tcacctcaatgcaattggca |
30720331 |
T |
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| Q |
121 |
tattctgttgggtttgattttctgacttgtgaaaaagaggataatttctcttgggctc--tatatgagtgtattgatcttttgaagtgtaaagaaaatat |
218 |
Q |
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| T |
30720332 |
tactctgttgggtttgattttctgacttgtgaaaaagaggataatttctcttgggctctatatatgagtgtattgatcttttgaagtgtaaagaaaatat |
30720431 |
T |
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| Q |
219 |
gccgaag |
225 |
Q |
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| ||||| |
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| T |
30720432 |
gtcgaag |
30720438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 1196295 - 1196512
Alignment:
| Q |
9 |
aaattgttaaacatttttcctactgttttgttgatggattccacttctaaaaccaaacactacaaaattccattgtttaagatagttgggggtcacctca |
108 |
Q |
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| T |
1196295 |
aaattgtttaacacatttcctactgtattggtgatggattcgacttataaaaccaatcaatacaaaatgccgttgcttgagattgttggtt-tgacctca |
1196393 |
T |
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| Q |
109 |
acgcaattggcatattctgttgggtttgattttctgacttgtgaaaaagaggataatttctcttgggctctatatgagtgtattgatcttttgaagtgta |
208 |
Q |
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| T |
1196394 |
actgagatgacatataatgtcgggtttgcttttttaactatggagaaagaggataatttcacttgggctctacaagagtgtgctaatctgttgaagtgta |
1196493 |
T |
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| Q |
209 |
aagaaaatatgccgaaggt |
227 |
Q |
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| T |
1196494 |
aaaaacaaatgccgaaggt |
1196512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 19805778 - 19805995
Alignment:
| Q |
9 |
aaattgttaaacatttttcctactgttttgttgatggattccacttctaaaaccaaacactacaaaattccattgtttaagatagttgggggtcacctca |
108 |
Q |
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|||||||| |||| ||||||||||| ||| |||||||||| |||| ||||||||| || |||||||| || |||||| |||| ||| || | |||||| |
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| T |
19805778 |
aaattgtttaacacatttcctactgtattggtgatggattcgacttataaaaccaatcaatacaaaatgccgttgtttgagattgtt-ggtttgacctca |
19805876 |
T |
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| Q |
109 |
acgcaattggcatattctgttgggtttgattttctgacttgtgaaaaagaggataatttctcttgggctctatatgagtgtattgatcttttgaagtgta |
208 |
Q |
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|| | || ||||| ||| ||||||| |||| | ||| || ||||||||||||||| |||||| |||| | |||| | | |||| |||||||||| |
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| T |
19805877 |
actgagatgacatataatgtcgggtttgcttttttaactatggagaaagaggataatttcacttggggtctacaagagtctgctaatctgttgaagtgta |
19805976 |
T |
|
| Q |
209 |
aagaaaatatgccgaaggt |
227 |
Q |
| |
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|| || | ||||||||||| |
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| T |
19805977 |
aaaaacaaatgccgaaggt |
19805995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 22518905 - 22518972
Alignment:
| Q |
24 |
tttcctactgttttgttgatggattccacttctaaaaccaaacactacaaaattccattgtttaagat |
91 |
Q |
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||||||||||| ||| |||||||||| |||||||||| ||| || |||||||| || |||||| |||| |
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| T |
22518905 |
tttcctactgtattggtgatggattcaacttctaaaatcaatcaatacaaaatgccgttgtttgagat |
22518972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 30410083 - 30410164
Alignment:
| Q |
138 |
ttttctgacttgtgaaaaagaggataatttctcttgggctctatatgagtgtattgatcttttgaagtgtaaagaaaatatg |
219 |
Q |
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|||| |||||||||| ||||| || ||||| |||||||| || | ||||||| ||||||| |||||||||||||||||| |
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| T |
30410083 |
ttttatgacttgtgagaaagaagaaaattttacttgggctatacaattgtgtattaatcttttaaagtgtaaagaaaatatg |
30410164 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 9265339 - 9265394
Alignment:
| Q |
32 |
tgttttgttgatggattccacttctaaaaccaaacactacaaaattccattgttta |
87 |
Q |
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||||||||||||| ||||||| | ||||||||| ||||| ||||||||||| |||| |
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| T |
9265339 |
tgttttgttgatgaattccacctataaaaccaatcactataaaattccatttttta |
9265394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 16061760 - 16061674
Alignment:
| Q |
12 |
ttgttaaacatttttcctactgttttgttgatggattccacttctaaaaccaaacactacaaaattccattgtttaagatagttggg |
98 |
Q |
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|||||||||| ||||||| |||||||||||||||| ||||| | ||||| ||| |||||||| |||||||| | ||||||||| |
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| T |
16061760 |
ttgttaaacacttttcctgctgttttgttgatggactccacatataaaagcaacttttacaaaatgtcattgtttcaaatagttggg |
16061674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 9265811 - 9265855
Alignment:
| Q |
186 |
gtgtattgatcttttgaagtgtaaagaaaatatgccgaaggtgat |
230 |
Q |
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|||| ||||||||||||||| |||||| |||||||| |||||||| |
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| T |
9265811 |
gtgtcttgatcttttgaagtctaaagataatatgccaaaggtgat |
9265855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 25214773 - 25214695
Alignment:
| Q |
149 |
gtgaaaaagaggataatttctcttgggctctatatgagtgtattgatcttttgaagtgtaaagaaaatatgccgaaggt |
227 |
Q |
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|||| ||||||||||||||| ||||||||||| | |||||| | || | |||||||||||| || | ||||||||||| |
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| T |
25214773 |
gtgagaaagaggataatttcacttgggctctacaagagtgtgctaatatgttgaagtgtaaaaaacaaatgccgaaggt |
25214695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 8313038 - 8313106
Alignment:
| Q |
29 |
tactgttttgttgatggattccacttctaaaaccaaacactacaaaattccattgtttaagatagttgg |
97 |
Q |
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| T |
8313038 |
tactgtattggtgatggattcgacttataaaatcaatcaatacaaaatatcattgtttaagatcgttgg |
8313106 |
T |
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