View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5892_low_61 (Length: 241)
Name: NF5892_low_61
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_low_61 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 48166617 - 48166838
Alignment:
| Q |
1 |
agactaggttaaactttgctaggctgaacatgacttgctttgaaaatgttaggcttcaatctgtcctattagtctgccataggctcatttttaaggtttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48166617 |
agactaggttaaactttgctaggctgaacatgacttactttgaaaatgttaggcttcaatctgtcctattagtctgccataggctcatttttaaggtttg |
48166716 |
T |
|
| Q |
101 |
acctgactttttggtaagtccgtttaatagtctatttcacgannnnnnnngacgaaaaatatacaccactaataatggtgtagactgtcataaataaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48166717 |
acctgactttttggtaagtccgtttaatagtctatttcacgattttttttgacgaaaaatatacaccactaataatggtgtagattgtcataaataaact |
48166816 |
T |
|
| Q |
201 |
aacaatgaaattgacataattt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
48166817 |
aacaatgaaattgacataattt |
48166838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University