View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_low_62 (Length: 241)
Name: NF5892_low_62
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_low_62 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 29 - 225
Target Start/End: Original strand, 27295336 - 27295532
Alignment:
| Q |
29 |
gtatctaactagctaaaattccatgatcaacataaatcatgagctgtctgaatccgattgttcggtggtttcccaatttgtagacaatcaataggtggaa |
128 |
Q |
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| T |
27295336 |
gtatctaactagctaaaattccatgatcaacataaatcatgagctgtctgaatccgattgttcggtggtttcccaatttgtagacaatcaataggtggaa |
27295435 |
T |
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| Q |
129 |
cagtagcagttttcagttcaccatatgtctcccaacagaatggatcataaagatggtatttatcttgaacaggttgtaactcaacacttgttaaaga |
225 |
Q |
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| T |
27295436 |
cagtagcagttttcagttcaccatatgtctcccaacagaatggatcataaagatggtatttatcttgaacaggttgtaactcaacacttgttaaaga |
27295532 |
T |
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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 225
Target Start/End: Complemental strand, 14739416 - 14739246
Alignment:
| Q |
55 |
tcaacataaatcatgagctgtctgaatccgattgttcggtggtttcccaatttgtagacaatcaataggtggaacagtagcagttttcagttcaccatat |
154 |
Q |
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| T |
14739416 |
tcaacatatatcgtgatcagtttgaattcgattattcgacggtttcccaatctgtaaacaaccaattggtgggacagttggagttcttaattcaccaaaa |
14739317 |
T |
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| Q |
155 |
gtctcccaacagaatggatcataaagatggtatttatcttgaacaggttgtaactcaacacttgttaaaga |
225 |
Q |
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| T |
14739316 |
gtctgccagcaaaatggatcatatagatgatatttttcttgaattggttttaactcaacagtggttaaaga |
14739246 |
T |
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