View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_low_63 (Length: 240)
Name: NF5892_low_63
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_low_63 |
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Alignment Details
Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 48 - 156
Target Start/End: Original strand, 8716445 - 8716552
Alignment:
| Q |
48 |
gttaatctaacctgaaaattattgtgagtgaaaatccacgtggtttcgaaaacaaaatgatgtgtttggtgtgctatgaaaattaataatatgcacgagt |
147 |
Q |
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| T |
8716445 |
gttaatctaacctgaaaattattgtgagtgaaaatccacgtggtttcgaaaacaaaatgatgtgtttggtgtgcaatg-aaattaataatatgcacgagt |
8716543 |
T |
|
| Q |
148 |
tatcatcat |
156 |
Q |
| |
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||||||||| |
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| T |
8716544 |
tatcatcat |
8716552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 8723902 - 8723983
Alignment:
| Q |
48 |
gttaatctaacctgaaaattattgtgagtgaa-aatccacgtggtttcgaaaacaaaatgatgtgtttggtgtgctatgaaa |
128 |
Q |
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| T |
8723902 |
gttaagctaacctagaaattattatgagtgaagaatccacacagtttcgaacacaaaatgatgtgtttgttgtgctatgaaa |
8723983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 223
Target Start/End: Original strand, 8716549 - 8716584
Alignment:
| Q |
188 |
tcatatatctatagttcattatttatataggatagt |
223 |
Q |
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| T |
8716549 |
tcatatatctatagttcattatttatataggatagt |
8716584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 23443883 - 23443777
Alignment:
| Q |
48 |
gttaatctaacctgaaaattattgtgagtgaaaa-tccacgtggtttcgaaaacaaaatgatgtgtttggtgtgctatgaaaattaataatatgcacgag |
146 |
Q |
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| T |
23443883 |
gttaatctaacctgaaaattattgcgagtgaaaaatccacgtggtttcgaaaacaaaatgatgtgtttgatgtgctatg-aaattaataatatgcgcggg |
23443785 |
T |
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| Q |
147 |
ttatcatc |
154 |
Q |
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|||||||| |
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| T |
23443784 |
ttatcatc |
23443777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 23443775 - 23443745
Alignment:
| Q |
191 |
tatatctatagttcattatttatataggata |
221 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
23443775 |
tatatctatagttcattatttatataggata |
23443745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 14333655 - 14333549
Alignment:
| Q |
49 |
ttaatctaacctgaaaattattgtgagtgaaaatc-cacgtggtttcgaaaacaaaatgatgtgtttggtgtgctatgaaaattaataatatgcacgagt |
147 |
Q |
| |
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|||||||||| ||||||||||| |||||||||| || ||||||| |||||||||||||||||||| ||| ||||| |||||||||||||| | || | |
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| T |
14333655 |
ttaatctaac-tgaaaattattctgagtgaaaaaagcatgtggtttggaaaacaaaatgatgtgtttattgtactatg-aaattaataatatgaatgact |
14333558 |
T |
|
| Q |
148 |
tatcatcat |
156 |
Q |
| |
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||||||||| |
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|
| T |
14333557 |
tatcatcat |
14333549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 14329658 - 14329590
Alignment:
| Q |
87 |
gtggtttcgaaaacaaaatgatgtgtttggtgtgctatgaaaattaataatatgcacgagttatcatcat |
156 |
Q |
| |
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||||||| |||||||||||||||||||| ||| ||||| |||||||||||||| | || |||||||||| |
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| T |
14329658 |
gtggtttggaaaacaaaatgatgtgtttattgtactatg-aaattaataatatgaatgacttatcatcat |
14329590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 14323957 - 14323851
Alignment:
| Q |
49 |
ttaatctaacctgaaaattattgtgagtgaaaatc-cacgtggtttcgaaaacaaaatgatgtgtttggtgtgctatgaaaattaataatatgcacgagt |
147 |
Q |
| |
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|||||||||| ||| ||||||| |||||||||| || ||||||| |||||||||||||||||||| ||| |||| || ||||||||||| | || | |
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| T |
14323957 |
ttaatctaac-tgagaattattctgagtgaaaaaagcatgtggtttggaaaacaaaatgatgtgtttattgtactat-taatttaataatatgaatgact |
14323860 |
T |
|
| Q |
148 |
tatcatcat |
156 |
Q |
| |
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||||||||| |
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|
| T |
14323859 |
tatcatcat |
14323851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 21236979 - 21236898
Alignment:
| Q |
48 |
gttaatctaacctgaaaattattgtgagtgaa-aatccacgtggtttcgaaaacaaaatgatgtgtttggtgtgctatgaaa |
128 |
Q |
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||||| ||||||| |||||||| |||||||| ||||||| |||||||| ||||||||||||||||| | |||||||||| |
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| T |
21236979 |
gttaagctaacctagaaattattatgagtgaagaatccacacagtttcgaacacaaaatgatgtgtttgttctgctatgaaa |
21236898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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