View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_low_65 (Length: 240)
Name: NF5892_low_65
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 6 - 211
Target Start/End: Complemental strand, 7496218 - 7496016
Alignment:
| Q |
6 |
ataaattcaccgaactagacaatgtgacaccaccaaatccatttatttctaaatccttgatattggagtgtagaatgtcatgtagaatcatttcatcttt |
105 |
Q |
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| T |
7496218 |
ataaattggccgaactagacaatgtcacaccaccaaatccatttatttctaaatccttgatattggagtgtagaatgtcatgtagaatcatatcatcttt |
7496119 |
T |
|
| Q |
106 |
ttcaaactcattgctaacaccaacagtgtactcttccttccaattcagtgtcaatcgatgaagatgtgacttccctattaaattcatatgcttagcttct |
205 |
Q |
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|||||| ||||||| | ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7496118 |
ttcaaaatcattgccatcaccaacagtg---tcttccttccaattcaatgtcaatcgatgaagatgtgacttccctattaaattcatatgtttagcttct |
7496022 |
T |
|
| Q |
206 |
gttgga |
211 |
Q |
| |
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|||||| |
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| T |
7496021 |
gttgga |
7496016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 7 - 211
Target Start/End: Original strand, 7127317 - 7127518
Alignment:
| Q |
7 |
taaattcaccgaactagacaatgtgacaccaccaaatccatttatttctaaatccttgatattggagtgtagaatgtcatgtagaatcatttcatctttt |
106 |
Q |
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|||||| ||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| || ||||| ||| |
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| T |
7127317 |
taaattgaccaaactagacaatgtcacaccaccaaatccatttattgctaaatccttgatattggagtgtcgaatgtcatgtagaattatatcatccttt |
7127416 |
T |
|
| Q |
107 |
tcaaactcattgctaacaccaacagtgtactcttccttccaattcagtgtcaatcgatgaagatgtgacttccctattaaattcatatgcttagcttctg |
206 |
Q |
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| T |
7127417 |
tcaaactcattctcatcaccaacagtg---tgttgtttccaattcaatgtcaatcgatgaagatgtgacttccctattaaattcatatgtttagcttctg |
7127513 |
T |
|
| Q |
207 |
ttgga |
211 |
Q |
| |
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||||| |
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|
| T |
7127514 |
ttgga |
7127518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 7483809 - 7483617
Alignment:
| Q |
16 |
cgaactagacaatgtgacaccaccaaatccatttatttctaaatccttgatattggagtgtagaatgtcatgtagaatcatttcatctttttcaaactca |
115 |
Q |
| |
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|||||| |||||||| |||||||| |||||| ||||| |||| |||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| |
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| T |
7483809 |
cgaacttgacaatgtcacaccaccgaatccacttattactaatgccttgatattggagtgcagaatgtcatgtagaattatttcatccttttcaaactca |
7483710 |
T |
|
| Q |
116 |
ttgctaacaccaacagtgtactcttccttccaattcagtgtcaatcgatgaagatgtgacttccctattaaattcatatgcttagcttctgttgga |
211 |
Q |
| |
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| T |
7483709 |
ttgccatcaccaacagtg---tgttgtttccacttcaatctcaatcgatgaagatgtgacttccctattaaattcatatgcttagcttctgttgga |
7483617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 21 - 234
Target Start/End: Complemental strand, 7521861 - 7521651
Alignment:
| Q |
21 |
tagacaatgtgacaccaccaaatccatttatttctaaatccttgatattggagtgtagaatgtcatgtagaatcatttcatctttttcaaactcattgct |
120 |
Q |
| |
|
|||||||| | |||||||| |||||| ||||||| || ||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||| |
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| T |
7521861 |
tagacaatttcacaccaccgaatccacttatttccaagtccttgatattggagtgcagaatgtcatgtagaattatatcatctttttcaaactcattgcc |
7521762 |
T |
|
| Q |
121 |
aacaccaacagtgtactcttccttccaattcagtgtcaatcgatgaagatgtgacttccctattaaattcatatgcttagcttctgttggagaagaccta |
220 |
Q |
| |
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| |||||||||| || ||| ||||| |||| || || | || |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
7521761 |
atcaccaacagt---ctgttcattccatttcaatgataaccaatcaagatgtgacttccctattaaattcatatgcttagcttctgttggacaaggcctc |
7521665 |
T |
|
| Q |
221 |
agacgttccaagcc |
234 |
Q |
| |
|
||| |||||||||| |
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|
| T |
7521664 |
agatgttccaagcc |
7521651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 6 - 237
Target Start/End: Original strand, 7720588 - 7720819
Alignment:
| Q |
6 |
ataaattcaccgaactagacaatgtgacaccaccaaatccatttatttctaaatccttgatattggagtgtagaa---tgtcatgtagaatcatttcatc |
102 |
Q |
| |
|
||||||| |||||||||||||||| |||||||| |||||| |||||||||| |||||||||||||||| |||| ||| || |||||| || ||||| |
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| T |
7720588 |
ataaattggccgaactagacaatgtcacaccaccgaatccacttatttctaaggccttgatattggagtgcagaactatgtgatttagaattatatcatc |
7720687 |
T |
|
| Q |
103 |
tttttcaaactcattgctaacaccaacagtgtactcttccttccaattcagtgtcaatcgatgaagatgtgacttccctattaaattcatatgcttagct |
202 |
Q |
| |
|
|||||||||||||||| | ||| |||| ||| | || ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7720688 |
tttttcaaactcattgtcatcactaacaatgtgttgtt---tccaattcaatgtcaatcgacgaagatgtgacttccctattaaattcatatgcttagct |
7720784 |
T |
|
| Q |
203 |
tctgttggagaagacctaagacgttccaagccatt |
237 |
Q |
| |
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||||||||| || ||| ||| ||||||||||||| |
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| T |
7720785 |
tctgttggacaatgcctcagatgttccaagccatt |
7720819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 7 - 235
Target Start/End: Complemental strand, 7529943 - 7529715
Alignment:
| Q |
7 |
taaattcaccgaactagacaatgtgacaccaccaaatccatttatttctaaatccttgatattggagtgtagaa---tgtcatgtagaatcatttcatct |
103 |
Q |
| |
|
|||||| || ||| |||||||| | |||||||| |||||| ||||| ||| ||||||||||||||| |||| |||| |||||||| ||||||||| |
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| T |
7529943 |
taaattgactgaattagacaatttcacaccaccgaatccacttattattaaggtcttgatattggagtgcagaagtatgtcttgtagaattatttcatct |
7529844 |
T |
|
| Q |
104 |
ttttcaaactcattgctaacaccaacagtgtactcttccttccaattcagtgtcaatcgatgaagatgtgacttccctattaaattcatatgcttagctt |
203 |
Q |
| |
|
||||| ||||||||| | |||||||| ||| ||||||||||||||| || ||| | || |||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
7529843 |
ttttctaactcattggcatcaccaacattgt---cttccttccaattcaatgccaaccaatcaagatgtgacttccctcttaaattcataggcttagctt |
7529747 |
T |
|
| Q |
204 |
ctgttggagaagacctaagacgttccaagcca |
235 |
Q |
| |
|
|||||||| || ||| | | ||||||||||| |
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|
| T |
7529746 |
ctgttggacaatgcctcaaatgttccaagcca |
7529715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 211
Target Start/End: Original strand, 7716756 - 7716963
Alignment:
| Q |
4 |
taataaattcaccgaactagacaatgtgacaccaccaaatccatttatttctaaatccttgatattggagtgtagaa---tgtcatgtagaatcatttca |
100 |
Q |
| |
|
||||||||| | |||||||| ||| | |||||||||||||||||||||| ||| |||| ||||||||||| |||| ||||| ||||||| || ||| |
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|
| T |
7716756 |
taataaattggctgaactagaaaatttcacaccaccaaatccatttatttgtaagccctttatattggagtgcagaaccatgtcaagtagaattatatca |
7716855 |
T |
|
| Q |
101 |
tctttttcaaactcattgctaacaccaacagtgtactcttccttccaattcagtgtcaatcgatgaagatgtgacttccctattaaattcatatgcttag |
200 |
Q |
| |
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|||||||| || ||| || | |||||||||||| | | |||||||||| ||||||| | |||||||||||||||||||||||||||| ||||||| |
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| T |
7716856 |
tctttttccaagtcactggcatcaccaacagtgtg---tacattccaattcaatgtcaattcacgaagatgtgacttccctattaaattcatgtgcttag |
7716952 |
T |
|
| Q |
201 |
cttctgttgga |
211 |
Q |
| |
|
||||||||||| |
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|
| T |
7716953 |
cttctgttgga |
7716963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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