View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_low_72 (Length: 234)
Name: NF5892_low_72
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_low_72 |
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Alignment Details
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 29620708 - 29620775
Alignment:
| Q |
35 |
aaaaatggatcttgttaacgagtgttgctgagacaatccttaacatttccttaaaaagattgtaacaa |
102 |
Q |
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| T |
29620708 |
aaaaatggatcttgttaacgagtgttcctgagacaatccttaacatttccttaaaaagattgtaacaa |
29620775 |
T |
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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 29620781 - 29620830
Alignment:
| Q |
136 |
agcttcaaaaactctttgagcttcccaaatcaaaagagttttgtattatg |
185 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
29620781 |
agcttcaaaaactctttgagcttcccaaatgagaagagttttgtattatg |
29620830 |
T |
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