View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5892_low_75 (Length: 225)

Name: NF5892_low_75
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5892_low_75
NF5892_low_75
[»] chr1 (3 HSPs)
chr1 (1-208)||(51020462-51020671)
chr1 (101-146)||(48940613-48940658)
chr1 (102-146)||(16808830-16808874)
[»] chr4 (2 HSPs)
chr4 (103-146)||(7040300-7040343)
chr4 (105-146)||(52518698-52518739)
[»] chr6 (1 HSPs)
chr6 (107-144)||(9415050-9415087)
[»] chr7 (1 HSPs)
chr7 (106-146)||(28126666-28126706)
[»] chr2 (1 HSPs)
chr2 (106-146)||(29758062-29758102)


Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 51020462 - 51020671
Alignment:
Q  1 agtggcaacaagtaattttaattttaataacaacccattagtta--ggtcccagtattatgaaaaatggactttgatttaaattcacgattgaggagaac 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  51020462 agtggcaacaagtaattttaattttaataacaacccattagttataggtcccagtattatgaaaaatggactttgatttaaattcacgattgagcagaac 51020561  T
Q  99 aagatatttgttaaaatagttggaagttacgtggagttggttaaggtaannnnnnnnaaagtaagtgttggttaaggtagttaaatttagttaagtgtta 198  Q
    | ||||| ||||||||||||||||||||| |||||||||||||||||||        |||| ||||||||||||||||||||||||||||||||||||||    
T  51020562 aggatatctgttaaaatagttggaagttatgtggagttggttaaggtaatttattttaaaggaagtgttggttaaggtagttaaatttagttaagtgtta 51020661  T
Q  199 attagatggt 208  Q
    ||||||||||    
T  51020662 attagatggt 51020671  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 48940613 - 48940658
Alignment:
Q  101 gatatttgttaaaatagttggaagttacgtggagttggttaaggta 146  Q
    ||||| ||||||||||||||||||||| |||||||| |||||||||    
T  48940613 gatatatgttaaaatagttggaagttatgtggagttagttaaggta 48940658  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 16808874 - 16808830
Alignment:
Q  102 atatttgttaaaatagttggaagttacgtggagttggttaaggta 146  Q
    |||| ||||||||||||||||||||| ||| |||| |||||||||    
T  16808874 atatgtgttaaaatagttggaagttatgtgtagttagttaaggta 16808830  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 7040300 - 7040343
Alignment:
Q  103 tatttgttaaaatagttggaagttacgtggagttggttaaggta 146  Q
    |||||||||| |||||||||||||| |||||||| |||||||||    
T  7040300 tatttgttaagatagttggaagttatgtggagttagttaaggta 7040343  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 52518698 - 52518739
Alignment:
Q  105 tttgttaaaatagttggaagttacgtggagttggttaaggta 146  Q
    ||||||||||||||||||||||| ||| |||| |||||||||    
T  52518698 tttgttaaaatagttggaagttatgtgtagttagttaaggta 52518739  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 9415050 - 9415087
Alignment:
Q  107 tgttaaaatagttggaagttacgtggagttggttaagg 144  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  9415050 tgttaaaatagttggaagttatgtggagttagttaagg 9415087  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 28126706 - 28126666
Alignment:
Q  106 ttgttaaaatagttggaagttacgtggagttggttaaggta 146  Q
    |||||||||||||||||||||| ||| |||| |||||||||    
T  28126706 ttgttaaaatagttggaagttatgtgtagttagttaaggta 28126666  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 29758062 - 29758102
Alignment:
Q  106 ttgttaaaatagttggaagttacgtggagttggttaaggta 146  Q
    ||||||| |||||||||||||| |||||||| |||||||||    
T  29758062 ttgttaagatagttggaagttatgtggagttagttaaggta 29758102  T

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