View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_low_76 (Length: 223)
Name: NF5892_low_76
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_low_76 |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0855 (1 HSPs) |
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| [»] scaffold0847 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1636945 - 1637167
Alignment:
| Q |
1 |
gaagcgaagcacatcattgctccaacgaaacctacaacagtccttgaagagctactaggaggtggagcatcggcagcagccccacctgggcctgcagcat |
100 |
Q |
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| T |
1636945 |
gaagcgaagcacatcattgctccaaccaaacctacaacagtccttgaagagctactaggaggtggagcatcggcagcagccccacctgggcctgcagctt |
1637044 |
T |
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| Q |
101 |
cggctgttggggcttcagcgggagcattggtggcgggcaattttgaaggtgaaggagcagtcgcggactctgaaggagtctcagctgtgggagcatcagc |
200 |
Q |
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| T |
1637045 |
cggctgttggggcttcagcgggagcattggtggcgggctctttagaaggtgaaggagcagtcgcggactctgaaggagtctcagctgtgggagcatcagc |
1637144 |
T |
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| Q |
201 |
tttagcagccgaaggagagcttg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
1637145 |
tttagcagccgaaggagagcttg |
1637167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 1628819 - 1628896
Alignment:
| Q |
1 |
gaagcgaagcacatcattgctccaacgaaacctacaacagtccttgaagagctactaggaggtggagcatcggcagca |
78 |
Q |
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| T |
1628819 |
gaagcgaagcacatcactgctccaacaaaacctacagcaatccttgaagagctgctagtaggtgcagcatcggcagca |
1628896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 1612283 - 1612363
Alignment:
| Q |
1 |
gaagcgaagcacatcattgctccaacgaaacctacaacagtccttgaagagctactaggaggtggagcatcggcagcagcc |
81 |
Q |
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| T |
1612283 |
gaagctaagcacatcactgctccaacaaaacctataacaatccttgaagagctgctagtaggtgcagcatcggcagcagcc |
1612363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 1620466 - 1620546
Alignment:
| Q |
1 |
gaagcgaagcacatcattgctccaacgaaacctacaacagtccttgaagagctactaggaggtggagcatcggcagcagcc |
81 |
Q |
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|||| ||||||||||| |||||||| |||||||||||| ||||||||||||| |||| ||||| |||||||||||||||| |
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| T |
1620466 |
gaagagaagcacatcacagctccaacaaaacctacaacaatccttgaagagctgctagtaggtgcagcatcggcagcagcc |
1620546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0855 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0855
Description:
Target: scaffold0855; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 5008 - 5085
Alignment:
| Q |
1 |
gaagcgaagcacatcattgctccaacgaaacctacaacagtccttgaagagctactaggaggtggagcatcggcagca |
78 |
Q |
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|||||||||||||||| ||||||||| |||||||||||| ||||||||||||| ||| ||||| ||||||||||||| |
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| T |
5008 |
gaagcgaagcacatcactgctccaacaaaacctacaacaatccttgaagagctgctaataggtgcagcatcggcagca |
5085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0847 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0847
Description:
Target: scaffold0847; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 5173 - 5250
Alignment:
| Q |
1 |
gaagcgaagcacatcattgctccaacgaaacctacaacagtccttgaagagctactaggaggtggagcatcggcagca |
78 |
Q |
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|||||||||||||||| ||||||||| |||||||||||| ||||||||||||| ||| ||||| ||||||||||||| |
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| T |
5173 |
gaagcgaagcacatcactgctccaacaaaacctacaacaatccttgaagagctgctaataggtgcagcatcggcagca |
5250 |
T |
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