View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_low_79 (Length: 205)
Name: NF5892_low_79
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_low_79 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 1331428 - 1331249
Alignment:
| Q |
1 |
tcacaccaattgcatcaacattaacgtcattagtaccatcatgagtcgcgtcatttgcatcaacaatgtcgtcatcatcaacaaaattttcaacatgagt |
100 |
Q |
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| T |
1331428 |
tcacaccaattgcatcaacattaacgtcatcagtaccatcatgagtcgcgtcatttgcatcaacaatgtcgtcattatcaacaaaattttcaacatgagt |
1331329 |
T |
|
| Q |
101 |
aataacaagtgttgcacccgcgcttcaaaagccttggaggatgctatgccgtatgtattctccttgtcaacatatttatgaattgttt |
188 |
Q |
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| T |
1331328 |
aataacaagtg--------gcacttcaaaagccttggaggatgctatgccgtatgcattctccttgtcaacatatttatgaattgttt |
1331249 |
T |
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