View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_low_8 (Length: 528)
Name: NF5892_low_8
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 38 - 361
Target Start/End: Complemental strand, 36390592 - 36390269
Alignment:
| Q |
38 |
tgacttgtgcaattagaataacttcaattttagaaattggcaaaggactttgaagcatttcttaacaaagtttcacacttatatattttttcaagagagt |
137 |
Q |
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| T |
36390592 |
tgacttgtgcaattagaataacttcaattttagaaattggcaaaggactttgaagcatttcttaacaaagtttcacacttatatatttttttaagagagt |
36390493 |
T |
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| Q |
138 |
caggagagtcatgtgtatgatttggatatgtttgaagatgaagaaatggatttcgaagcttatgagttattaaacaacctttcgtgtatccgaaaaacac |
237 |
Q |
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| T |
36390492 |
caggagagtcatgtgtatgatttggatatgtttgaagatgaagaaatggattttgaagcttatgagttattaaacaacctttcgtgtatcccaaaaacac |
36390393 |
T |
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| Q |
238 |
tttcaccatgaacaactcttttgccgcacgagcaattggtgtaccaccatccttcatcaacgatgatctcagcaatggtacccaaaacaacaattgagtt |
337 |
Q |
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| T |
36390392 |
tttcaccatcaacaactcttttgccgcacgagcaattggtgtaccaccatccttcatcaacgatgatctcaacaatggtacccaaaacaacaattgagtt |
36390293 |
T |
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| Q |
338 |
tgtttgcaaagtctctgattgagg |
361 |
Q |
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||| |||||||||||||||||||| |
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| T |
36390292 |
tgtctgcaaagtctctgattgagg |
36390269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 72 - 361
Target Start/End: Original strand, 36390611 - 36390891
Alignment:
| Q |
72 |
aattggcaaaggactttgaagcatttcttaacaaagtttcacacttatatattttttcaagagagtcaggagagtcatgtgtatgatttggatatgtttg |
171 |
Q |
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| T |
36390611 |
aattggcaaaggactttgaagcatttcttaacaaagtttcacacttatatattttttca---------ggagagtcatgtgtatgatttggatatgtttg |
36390701 |
T |
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| Q |
172 |
aagatgaagaaatggatttcgaagcttatgagttattaaacaacctttcgtgtatccgaaaaacactttcaccatgaacaactcttttgccgcacgagca |
271 |
Q |
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| T |
36390702 |
aagatgaagcagtggatttcgaagcttatgagttattaaacaacctttcgtgtgtccgaaaaactctttcatcatgaacaactcttttgccgcacgagca |
36390801 |
T |
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| Q |
272 |
attggtgtaccaccatccttcatcaacgatgatctcagcaatggtacccaaaacaacaattgagtttgtttgcaaagtctctgattgagg |
361 |
Q |
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| T |
36390802 |
attggtgtaccaccatccttcaccaacgatgatctcagcaatggtacccaaaacaacaattgagtttgtctacaaagtctccgattgagg |
36390891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 421 - 517
Target Start/End: Complemental strand, 36390209 - 36390113
Alignment:
| Q |
421 |
gctatttagagattcaatacatattattcatgtttaaattatttctttaaggtagtagctattgaaatacctcttgataagacctgagtccattcat |
517 |
Q |
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| T |
36390209 |
gctatttacagattcaatacatattattcatgtttaaattatttctttaaggtagtagctattgaaatacctcttgataagacctgagtccattcat |
36390113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 421 - 517
Target Start/End: Original strand, 36390951 - 36391047
Alignment:
| Q |
421 |
gctatttagagattcaatacatattattcatgtttaaattatttctttaaggtagtagctattgaaatacctcttgataagacctgagtccattcat |
517 |
Q |
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| T |
36390951 |
gctatctatagattctatacatattattcatgtttaaattatttctttaaggcagtagctattgaaatgcctcttgataagacctgagtccattcat |
36391047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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