View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5892_low_9 (Length: 515)
Name: NF5892_low_9
Description: NF5892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5892_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 283 - 499
Target Start/End: Original strand, 7978731 - 7978947
Alignment:
| Q |
283 |
ttaagcattaagacactaacgtgatcacatactaatatcacaattttttctagaactggcacataattcaagcgcaacttaaaactgcatttctctgcag |
382 |
Q |
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| T |
7978731 |
ttaagcattaagacactaacgtgatcgcatactaatatcacaattttttctagaactggcacatgattcaagcgcaacttaaaactgcatttctctgcag |
7978830 |
T |
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| Q |
383 |
ggaaactcagaattttgcatagaaattacacccccgatcaactttaaatgtcatctggttttttattttcttcctttatttccacccaaaacatccaagg |
482 |
Q |
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| T |
7978831 |
ggaaactcagaattttgcatagaaattacacccccgatcaactttaaatgtcatctggttttttattttcttcctttatttccacccaaaacatccaagg |
7978930 |
T |
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| Q |
483 |
taagggacccacgatat |
499 |
Q |
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| T |
7978931 |
taagggacccacgatat |
7978947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 7978495 - 7978721
Alignment:
| Q |
1 |
aaagatgatcataataactagnnnnnnncaagcttcctttcactgtgattattttgttgtaatgtttcatatgattaacagtacattcattcatgtattg |
100 |
Q |
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| T |
7978495 |
aaagatgatcataataactagtttttttcaagcttcctttcactgtgattattttgttgtaatgtttcatatgattaacagtacattcattcatgtattg |
7978594 |
T |
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| Q |
101 |
atccaaagaatattctttcatagagagcccatctaaacataagcgtctaaaaacttatttgtaaataaacatccaccattaagtgcttaaattttaagtc |
200 |
Q |
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| T |
7978595 |
atccaaagaatattctttcatagagagcccatctaaacataagcgtctaaaaacttatttgtaaataaacatccaccattaagtgcttaaattttaagtc |
7978694 |
T |
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| Q |
201 |
agaagccatctataactaacaaatgtt |
227 |
Q |
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| T |
7978695 |
agaagccatctataattaacaaatgtt |
7978721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 1515976 - 1515898
Alignment:
| Q |
46 |
tgattattttgtt---gtaatgtttcatatgattaacagtacattcattcatgtattgatccaaagaatattctttcat |
121 |
Q |
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| T |
1515976 |
tgattattttgttaatgtattgtttcatataattaacattacattcattcatgtattgatccaaaaattattctttcat |
1515898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 1530206 - 1530132
Alignment:
| Q |
46 |
tgattattttgtt---gtaatgtttcatatgattaacagtacattcattcatgtattgatccaaagaatattctt |
117 |
Q |
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| T |
1530206 |
tgattattttgttaatgtattgtttcatataattaacattacattcattcatgtattgatccaaaaattattctt |
1530132 |
T |
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