View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5893-Insertion-1 (Length: 628)
Name: NF5893-Insertion-1
Description: NF5893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5893-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 8 - 619
Target Start/End: Original strand, 21013334 - 21013939
Alignment:
| Q |
8 |
aagagtttctactcgaatctttgacctagagaagataagttttcaagttagtttcgagtactatactcaaatgctctagaaaacttataaagaatgaagt |
107 |
Q |
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| T |
21013334 |
aagagtttgtacttgaatctttgacctagagaagataagttttcaagttagtatctagtactatactcaaatgctctagaaaacttgtaaagaatgaagt |
21013433 |
T |
|
| Q |
108 |
cttgaagctccagatatttccataagcactctctatcatacattatgttcattttttaaagtagtcaaggttcaaatgacccctatttccaagaaaatga |
207 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21013434 |
gttgaagctacagatatttccataagcactctctatcgtacactatgttcattttttaaagtagtcaaggttcaaatgacccctatttccaagaaaatga |
21013533 |
T |
|
| Q |
208 |
aactgaaagttgaaaatagaactctatgcaacnnnnnnnnncaatgtttcgaagatgatcatagaaaatatgtctgaggcataactcaatagttcgtcca |
307 |
Q |
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| T |
21013534 |
aactgaaagttgaaaatagaactctatgcaacaaaagaaaacaatgtttcgaagacgatcatagaaaatatgtctgaggcataactcaatagttcgtcca |
21013633 |
T |
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| Q |
308 |
aaaaagcttgtatnnnnnnntgaaactatgatacttcacaatggacctttactgtaacagtagttccagcattccctctaagcctcttcgctgcaccttc |
407 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21013634 |
aaaaagcttgtataaaaaaatgaaactatgatacttcacaatggacctttactgtaacagttgttccagcattccctctaagcctcttcgctgcaccttc |
21013733 |
T |
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| Q |
408 |
actatcaatgccattaagcctctcccctgcacaatcagatccattttcaaacaaaagaaaattactatttcattttcacaaggactaaatgtaataatat |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| || |
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| T |
21013734 |
actatcaatgccattaagcctctcccctgcacaatcagatccattttcaaacaaaagaaaattactatttcattttcagaaggac------taataaaat |
21013827 |
T |
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| Q |
508 |
tttacagaaaatcactttttacagcatcattctacattactgttttcaaattaaatattttagaataactaacttggtcagtaccatttatttcaactaa |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21013828 |
tttacagaaaatcactttttacagcatcattctacattactgttttcaaattaaatattttagaataactaacttggtcagtaccatttatttcaactaa |
21013927 |
T |
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| Q |
608 |
ttcatctccttg |
619 |
Q |
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|||||||||||| |
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| T |
21013928 |
ttcatctccttg |
21013939 |
T |
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